Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4056
         (717 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF006521-1|AAB62916.1|  122|Homo sapiens immunoglobulin heavy ch...    31   5.4  
AK128030-1|BAC87237.1| 2427|Homo sapiens protein ( Homo sapiens ...    30   9.5  
AK126463-1|BAC86558.1|  559|Homo sapiens protein ( Homo sapiens ...    30   9.5  
AK095945-1|BAC04658.1|  184|Homo sapiens protein ( Homo sapiens ...    30   9.5  
AF143946-1|AAD39760.1| 2971|Homo sapiens transcriptional activat...    30   9.5  
AB002307-1|BAA20768.2| 3053|Homo sapiens KIAA0309 protein.             30   9.5  

>AF006521-1|AAB62916.1|  122|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 122

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 235 ELIEFKAGIAAPGG-IRFSCRAARPRCTRHIIITIR 339
           +L+EF  G+  PGG +R SC A     +RH +I +R
Sbjct: 3   QLVEFGGGLVQPGGSLRLSCDATGFIFSRHDMIWVR 38


>AK128030-1|BAC87237.1| 2427|Homo sapiens protein ( Homo sapiens cDNA
            FLJ46149 fis, clone TESTI4000621, moderately  similar to
            Homo sapiens Snf2-related CBP activator protein (SRCAP).
            ).
          Length = 2427

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 19/71 (26%), Positives = 29/71 (40%)
 Frame = +2

Query: 485  SHPKPIPSMDALAGDIDAATSAALNHMLWLPYLTQLEAVANCSQSLNFLKALNSSGYNPS 664
            S P PIP+   LA  + +  S  L+  L +   T L A A+   ++     L  S   P+
Sbjct: 1412 SSPMPIPNSSPLASPVSSTVSVPLSSSLPISVPTTLPAPASAPLTIPISAPLTVSASGPA 1471

Query: 665  NYARVVADVQP 697
                V   + P
Sbjct: 1472 LLTSVTPPLAP 1482


>AK126463-1|BAC86558.1|  559|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44499 fis, clone UTERU3000665, highly  similar
           to Homo sapiens Snf2-related CBP activator protein
           (SRCAP). ).
          Length = 559

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 19/71 (26%), Positives = 29/71 (40%)
 Frame = +2

Query: 485 SHPKPIPSMDALAGDIDAATSAALNHMLWLPYLTQLEAVANCSQSLNFLKALNSSGYNPS 664
           S P PIP+   LA  + +  S  L+  L +   T L A A+   ++     L  S   P+
Sbjct: 61  SSPMPIPNSSPLASPVSSTVSVPLSSSLPISVPTTLPAPASAPLTIPISAPLTVSASGPA 120

Query: 665 NYARVVADVQP 697
               V   + P
Sbjct: 121 LLTSVTPPLAP 131


>AK095945-1|BAC04658.1|  184|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38626 fis, clone HEART2009599. ).
          Length = 184

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 317 RVHRGLAARQEKRMPPGAAIPALNSISSLFLCRERQVSN-LTYPSGSTSG 171
           R  RG   R+ +R+P    +P+L S SS  L R R     LT  S + SG
Sbjct: 12  RAARGRGGRRGQRLPGSPTLPSL-SFSSAILLRSRSPGRCLTITSAAVSG 60


>AF143946-1|AAD39760.1| 2971|Homo sapiens transcriptional activator
            SRCAP protein.
          Length = 2971

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 19/71 (26%), Positives = 29/71 (40%)
 Frame = +2

Query: 485  SHPKPIPSMDALAGDIDAATSAALNHMLWLPYLTQLEAVANCSQSLNFLKALNSSGYNPS 664
            S P PIP+   LA  + +  S  L+  L +   T L A A+   ++     L  S   P+
Sbjct: 1153 SSPMPIPNSSPLASPVSSTVSVPLSSSLPISVPTTLPAPASAPLTIPISAPLTVSASGPA 1212

Query: 665  NYARVVADVQP 697
                V   + P
Sbjct: 1213 LLTSVTPPLAP 1223


>AB002307-1|BAA20768.2| 3053|Homo sapiens KIAA0309 protein.
          Length = 3053

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 19/71 (26%), Positives = 29/71 (40%)
 Frame = +2

Query: 485  SHPKPIPSMDALAGDIDAATSAALNHMLWLPYLTQLEAVANCSQSLNFLKALNSSGYNPS 664
            S P PIP+   LA  + +  S  L+  L +   T L A A+   ++     L  S   P+
Sbjct: 1235 SSPMPIPNSSPLASPVSSTVSVPLSSSLPISVPTTLPAPASAPLTIPISAPLTVSASGPA 1294

Query: 665  NYARVVADVQP 697
                V   + P
Sbjct: 1295 LLTSVTPPLAP 1305


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,646,921
Number of Sequences: 237096
Number of extensions: 1833753
Number of successful extensions: 4110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4110
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)