Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4055
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po...    28   1.2  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    27   2.0  
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   2.7  

>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = -3

Query: 220 ISISLIHGFNDKK--VVFRYAFL*ASIKKLRFFSKSHTHIHPTKI 92
           I +SL+   +++K  VVF  A    +  KL+ +SKSH+++H  K+
Sbjct: 17  IGLSLVKELSNRKGTVVFASARKPGAATKLQEWSKSHSNVHIIKL 61


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -1

Query: 558 SFRCYSFETKSNALFFNVLTLVPNAL 481
           SFR Y F     ALF NVL  +P  L
Sbjct: 72  SFRDYQFNIVQKALFENVLVALPTGL 97


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 229 QTVFTFFS*MDGQTYSPPGVKWLLEPI 309
           +T  TF   MDG +YS   V WL E +
Sbjct: 137 RTSRTFLCGMDGNSYSEVAVDWLFETL 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,025,425
Number of Sequences: 5004
Number of extensions: 63871
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)