Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4055
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    30   1.9  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    30   1.9  
Z70311-4|CAA94373.1|  541|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z54342-16|CAA91156.1|  755|Caenorhabditis elegans Hypothetical p...    28   7.7  
Z47072-4|CAA87370.1|  755|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AL034365-3|CAA22261.1|  563|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +2

Query: 401 NALLLHGRNRRSGGTYPCG 457
           +A L+ GRN+RSGGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +2

Query: 401 NALLLHGRNRRSGGTYPCG 457
           +A L+ GRN+RSGGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>Z70311-4|CAA94373.1|  541|Caenorhabditis elegans Hypothetical
           protein T25B9.5 protein.
          Length = 541

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 347 MSSKISI*LQRLPHSSNRNALLLHGRNRRSGGTYPCGLTRGPTTSKALGTSVRT 508
           ++ K S+  Q++P SS R+      +  +   T P G++  P+T+ A   S  T
Sbjct: 470 LNRKKSVDRQKIPSSSKRSFFSSLRKKNKDQVTLPAGMSISPSTNSAKPPSSET 523


>Z54342-16|CAA91156.1|  755|Caenorhabditis elegans Hypothetical
           protein F26C11.1 protein.
          Length = 755

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = -1

Query: 186 RKWFFVTHFSKRPLRNSAFFPKATHTYTQLKLFTSNKLATFK 61
           R WF  T + + P  N   + +A  TY   K FT       K
Sbjct: 537 RNWFNDTMYQQLPWYNEDLYNEAQRTYAPFKRFTEGNFGNPK 578


>Z47072-4|CAA87370.1|  755|Caenorhabditis elegans Hypothetical
           protein F26C11.1 protein.
          Length = 755

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = -1

Query: 186 RKWFFVTHFSKRPLRNSAFFPKATHTYTQLKLFTSNKLATFK 61
           R WF  T + + P  N   + +A  TY   K FT       K
Sbjct: 537 RNWFNDTMYQQLPWYNEDLYNEAQRTYAPFKRFTEGNFGNPK 578


>AL034365-3|CAA22261.1|  563|Caenorhabditis elegans Hypothetical
           protein Y69E1A.3 protein.
          Length = 563

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 347 MSSKISI*LQRLPHSSNRNALLLHGRNRRSGGTYPCGLTRGPTTSKALGTSVRT 508
           ++ K S+  Q++P SS R+      +  +   T P G++  P+T+ A   S  T
Sbjct: 492 LNRKKSVDRQKIPSSSKRSFFSSLRKKNKDQVTLPAGMSISPSTNSAKPPSSET 545


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,540,555
Number of Sequences: 27780
Number of extensions: 352315
Number of successful extensions: 644
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)