Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4055
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   6.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.8  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 94  IIYVQ*TGNVQIN*DGRSLYNLLERRI 14
           I+YV   G V+++ DG+ L  L   ++
Sbjct: 138 IVYVMEEGKVEVSRDGKYLSTLAPGKV 164


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 389 SSNRNALLLHGRNRRSGGTYPCGLT 463
           ++  NA+LL GR+++S    P G T
Sbjct: 365 ATKENAMLLSGRSQKSTTGPPPGPT 389


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 389  SSNRNALLLHGRNRRSGGTYPCGLT 463
            SS  +++LLH ++  +GG    G T
Sbjct: 1414 SSTSSSILLHWKSGHNGGASLTGYT 1438


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 389  SSNRNALLLHGRNRRSGGTYPCGLT 463
            SS  +++LLH ++  +GG    G T
Sbjct: 1410 SSTSSSILLHWKSGHNGGASLTGYT 1434


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,256
Number of Sequences: 438
Number of extensions: 4192
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)