Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4053
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    36   0.008
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    30   0.41 
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.8  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    25   8.8  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    25   8.8  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 1/133 (0%)
 Frame = +2

Query: 338 FLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPSIIITA 517
           F+S +V  GL++   + P N         +L  F    G+++G  + + S     II+ A
Sbjct: 102 FISLVVLFGLIMKPYSYPRN-------YIFLFLFTALEGLTLGTAITFFSA---RIILEA 151

Query: 518 LLGTTLVFVCFSAAAMLAERGSWXXXXXXXXXXXXSMSLMTLVNLFMQSH-FLYQAHLYL 694
           +  T  VFV  +A    + +  +            S+ L  L+  F+ S  F+  A    
Sbjct: 152 VFITLGVFVALTAFTFQS-KWDFSRLGGFLYVSLWSLILTPLIFFFVPSTPFIDMAFAGF 210

Query: 695 GLMLMCGFVLFDT 733
           G ++ CG++LFDT
Sbjct: 211 GTLVFCGYILFDT 223


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 16/72 (22%), Positives = 35/72 (48%)
 Frame = +2

Query: 182 TINFQTFVNSFQNRLEPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFQAGFLSAIVGA 361
           TI+ ++F        E   + ++ N+   + ++ + A+  V V++ TR    +   IVG 
Sbjct: 730 TIDIESFWTPVDVVEEKSAKTYIDNLVGVMRLSVIKANDLVNVELPTRKSDPYARVIVGN 789

Query: 362 GLMLMLIATPDN 397
            ++   + TP+N
Sbjct: 790 SVVARTVYTPNN 801


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
 Frame = -1

Query: 618 NSVINVPPRNSQL--PRSASIAAAEKHTNTRV--VPSRAVIMIDGSTTLTYS--SRGPML 457
           N+ + +PPR +     R +++  +    ++ V  VPS +   ++  TT   S  SR PML
Sbjct: 318 NNPVYLPPRGNPTVNDRVSNVLPSITSFDSSVTTVPSNSPATLNSYTTSVPSGMSRHPML 377

Query: 456 MPDVNPNPS 430
           M    P PS
Sbjct: 378 MNPSTPEPS 386


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 101 TSNIKTQIILLKSLFRDPSESKKKNMNTIN 190
           TS+  T+  L    F +PS+S K  ++TIN
Sbjct: 189 TSSFNTRSPLRNHNFSNPSKSSKNGVHTIN 218


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 238 NWWFQSILKAVDKGLKIYCIHVFFFTF 158
           NWW++S +     G+ ++   VF++ F
Sbjct: 553 NWWWRSFITPGFCGIYVFIFSVFYWFF 579


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,023,684
Number of Sequences: 5004
Number of extensions: 62805
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)