Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4051
(723 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0874 - 28988687-28989736 29 3.7
03_03_0084 + 14337998-14338255,14338372-14339133 29 3.7
01_06_0692 + 31276342-31276479,31277161-31277408,31277541-312777... 29 4.9
01_03_0100 + 12550646-12550650,12550750-12550846,12551299-125517... 29 4.9
01_03_0095 + 12482908-12483111,12485906-12486340,12486434-12486835 29 4.9
06_01_0107 - 854756-854883,855126-856968 28 6.5
02_05_0209 - 26786399-26786449,26786533-26786625,26786721-267868... 28 6.5
02_02_0104 - 6802017-6802352,6802756-6803650,6803839-6803988,680... 24 7.4
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 28 8.6
11_06_0180 + 20962420-20962528,20962618-20962699,20962831-209629... 28 8.6
11_06_0155 - 20712601-20713553,20713618-20714000,20714240-207142... 28 8.6
01_06_1516 - 37908284-37908497,37909666-37909733,37909809-379101... 28 8.6
01_03_0101 + 12561109-12561321,12564041-12564883 28 8.6
>04_04_0874 - 28988687-28989736
Length = 349
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -2
Query: 383 HLDQPRQPDPWAGVLVHHVRALPTPSP-LFQALD-PVGLQFSGIGTQSPGTVCPGTND 216
+L P P A +VH R +PTPSP L +LD P+ + GT + + P D
Sbjct: 283 YLVDPAATQPPAPEIVH-TRLIPTPSPQLGSSLDTPIQVDSETEGTNTESEIKPDITD 339
>03_03_0084 + 14337998-14338255,14338372-14339133
Length = 339
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 488 NPEAQCFRPVEPAAGAVTASARGLLSCASVPCTAA 592
NP + F ++ A AV A+ G++SCA + AA
Sbjct: 111 NPSLRGFEVIDAAKDAVEAACPGVVSCADIVAFAA 145
>01_06_0692 +
31276342-31276479,31277161-31277408,31277541-31277722,
31278007-31278143,31278381-31278546,31278615-31278731,
31279038-31279198,31279431-31279634
Length = 450
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/61 (31%), Positives = 25/61 (40%)
Frame = -2
Query: 482 RVLPPDRFFHRQHARHC*TKPSQRPFLRYGMILHLDQPRQPDPWAGVLVHHVRALPTPSP 303
R FF H +H P RP YG ++HL R P + + A P+P P
Sbjct: 46 RTAATSTFFANPHVKHL-PGPFLRPSPHYGALVHLPSFRNKTPISIAMA----ASPSPPP 100
Query: 302 L 300
L
Sbjct: 101 L 101
>01_03_0100 +
12550646-12550650,12550750-12550846,12551299-12551712,
12552134-12552556
Length = 312
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 488 NPEAQCFRPVEPAAGAVTASARGLLSCASVPCTAAHLHDSYICTGRKF 631
NP + F ++ A AV A+ +SCA + AA DS TG F
Sbjct: 57 NPSLRGFEVIDAAKAAVEAACPRTVSCADILAFAA--RDSVNLTGNSF 102
>01_03_0095 + 12482908-12483111,12485906-12486340,12486434-12486835
Length = 346
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +2
Query: 449 ADERTDREVTRAFNPEAQCFRPVEPAAGAVTASARGLLSCASVPCTAAHLHDSYICTG 622
A +T+R+ T NP + F ++ A AV A+ +SCA + AA DS TG
Sbjct: 81 AGGQTERDATPN-NPSLRGFEVIDAAKAAVEAACPRTVSCADIIAFAA--RDSVKLTG 135
>06_01_0107 - 854756-854883,855126-856968
Length = 656
Score = 28.3 bits (60), Expect = 6.5
Identities = 23/81 (28%), Positives = 36/81 (44%)
Frame = +2
Query: 323 PVRDVLEHLPRDLAVWVDPGEVSYRIGEKGAVKVLFSSDERAADERTDREVTRAFNPEAQ 502
P +L H D A + S R GE+G V + +R+ + T R RA+ A+
Sbjct: 509 PTGSILNHSTSDRAF----ADSSTRTGERGYVDGTTRASDRSYVDATTRATDRAY---AE 561
Query: 503 CFRPVEPAAGAVTASARGLLS 565
R V+ GA+ + R +S
Sbjct: 562 ATRGVDLRGGALRGAPRRYVS 582
>02_05_0209 -
26786399-26786449,26786533-26786625,26786721-26786861,
26786973-26787050,26787146-26787247,26787595-26787693,
26787804-26787875,26787964-26788104,26788222-26788503
Length = 352
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +2
Query: 56 FSPYDCSLVLPKMHIEVQVALNFVISYLYNKLPRRRVNI-FGEELEKALKDKFRGHWYPD 232
+S ++ + ++ IE +V +N ++ + + PRRR+N+ FGE+ +D W
Sbjct: 38 YSSSGMNVGVSRLKIE-EVLVNGLLDAMKSSSPRRRLNVAFGEDNSSEEEDPAYSAWMAK 96
Query: 233 RPCRGSAFR 259
P ++F+
Sbjct: 97 CPSALASFK 105
>02_02_0104 -
6802017-6802352,6802756-6803650,6803839-6803988,
6804099-6804349
Length = 543
Score = 24.2 bits (50), Expect(2) = 7.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 305 ARESGVPVRDVLEHLPRDLAVWVDPG 382
ARE+ PV LP+ VW+ PG
Sbjct: 416 ARETSEPVEIAGHLLPKGTYVWLAPG 441
Score = 22.2 bits (45), Expect(2) = 7.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 491 PEAQCFRPVEPAAGAVTASAR 553
PE + FRP AAGA AR
Sbjct: 451 PEPEEFRPERFAAGAAEERAR 471
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 410 PFLRYGMILHLDQPRQPDPWAGV 342
P RY + L QPR+P W G+
Sbjct: 231 PVYRYKICLRFTQPREPAHWEGI 253
>11_06_0180 +
20962420-20962528,20962618-20962699,20962831-20962948,
20963024-20963062,20963181-20963343,20963706-20963921,
20964039-20964116,20964244-20964500,20964544-20964575,
20964815-20965197,20965262-20965831,20966250-20966343,
20966365-20966541,20966761-20966963,20968244-20968301,
20969126-20969381,20969553-20969789
Length = 1023
Score = 27.9 bits (59), Expect = 8.6
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Frame = +2
Query: 407 KGAVKVLFSSDERAADERTDREVTRAFNPEAQCFRPV-EPAAGAVTASARGLLSCASVPC 583
KG V + ++ +++A E+ R F+ C+R GA SC +
Sbjct: 555 KGFVSLFAAAKDKSAVVIASSELLR-FSHNIPCYRTTGNEKVGAPAGFMELDTSCLPIDM 613
Query: 584 TAAHLH---DSYICTGRKFGSTKLK-TSSKRANRMSP 682
DSYI G+K GST + T+ R++R P
Sbjct: 614 DMIFPSVTLDSYISLGKKKGSTLIDLTTDSRSSRKDP 650
>11_06_0155 -
20712601-20713553,20713618-20714000,20714240-20714271,
20714315-20714571,20714699-20714724,20714894-20715081,
20715302-20715595,20715714-20715752,20715827-20715944,
20716076-20716157,20716610-20716668,20717156-20717221,
20717358-20717447,20718142-20718236
Length = 893
Score = 27.9 bits (59), Expect = 8.6
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Frame = +2
Query: 407 KGAVKVLFSSDERAADERTDREVTRAFNPEAQCFRPV-EPAAGAVTASARGLLSCASVPC 583
KG V + ++ +++A E+ R F+ C+R GA SC +
Sbjct: 639 KGFVSLFAAAKDKSAVVIASSELLR-FSHNIPCYRTTGNEKVGAPAGFMELDTSCLPIDM 697
Query: 584 TAAHLH---DSYICTGRKFGSTKLK-TSSKRANRMSP 682
DSYI G+K GST + T+ R++R P
Sbjct: 698 DMIFPSVTLDSYISLGKKKGSTLIDLTTDSRSSRKDP 734
>01_06_1516 -
37908284-37908497,37909666-37909733,37909809-37910186,
37910315-37910393,37910433-37910749
Length = 351
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 293 LERAARESGVPVRDVLEHLPRDLAVWVDPGEVSYRI 400
L+R A E+ + +RD++E +P +A W D G + I
Sbjct: 62 LQRIANET-IELRDLVEIVPEPIAKWQDVGPDHFNI 96
>01_03_0101 + 12561109-12561321,12564041-12564883
Length = 351
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 488 NPEAQCFRPVEPAAGAVTASARGLLSCASVPCTAAHLHDSYICTG 622
NP + F ++ A AV A+ ++SCA + AA DS TG
Sbjct: 92 NPSLRGFEVIDAAKAAVEAACPRVVSCADILAFAA--RDSVALTG 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,954,651
Number of Sequences: 37544
Number of extensions: 475854
Number of successful extensions: 1497
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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