Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4048
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0505 - 34397054-34397087,34397127-34397474,34397650-343977...    33   0.13 
03_03_0062 + 14170303-14170637,14171799-14172029,14172224-141723...    29   2.8  
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    29   3.7  
12_01_0918 + 9072774-9072863,9073385-9073539,9073834-9074213,907...    28   4.9  
01_01_0840 - 6557931-6558377                                           28   4.9  
07_03_1777 + 29442542-29442652,29443394-29443455,29443540-294436...    27   8.5  
06_01_0569 + 4019254-4021996,4022121-4022272,4022356-4022427,402...    27   8.5  
04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095     27   8.5  

>03_06_0505 -
           34397054-34397087,34397127-34397474,34397650-34397757,
           34397847-34398161,34399027-34399442,34399531-34400946
          Length = 878

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = -2

Query: 112 RDSVAVSQGSSFRGDHQRGLRLQRTEQRSAWC 17
           +D  AV +  S RGD QR LRL +  QR +WC
Sbjct: 99  QDFAAVYREFSRRGDWQRSLRLFKYMQRQSWC 130


>03_03_0062 +
           14170303-14170637,14171799-14172029,14172224-14172326,
           14173284-14173513,14174258-14174456
          Length = 365

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -1

Query: 101 GCKPREQLPRRPPARTTLTAHRATISLVYMFVL 3
           G KPR  +P  PPART LTA  A  +L  + +L
Sbjct: 15  GRKPR--MPPLPPARTLLTAFAAAAALAVLCLL 45


>06_01_1087 +
           8901950-8902102,8902960-8903996,8904438-8904586,
           8905437-8905690,8905785-8908799,8908889-8909001,
           8909975-8910164,8910399-8910512,8910591-8910698,
           8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 86  EQLPRRPPARTTLTAHRATISLVYMF 9
           +Q+P+ PP   TL A  A IS+V +F
Sbjct: 442 DQIPKEPPIEKTLRASIAEISVVLLF 467


>12_01_0918 +
           9072774-9072863,9073385-9073539,9073834-9074213,
           9074299-9075273,9076001-9076134
          Length = 577

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -1

Query: 80  LPRRPPARTTLTAHR 36
           LPRRPP   T TAHR
Sbjct: 325 LPRRPPVNDTATAHR 339


>01_01_0840 - 6557931-6558377
          Length = 148

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1

Query: 209 RRQRCGHRERCEL 171
           RR RCGHR RC L
Sbjct: 54  RRPRCGHRRRCHL 66


>07_03_1777 +
           29442542-29442652,29443394-29443455,29443540-29443681,
           29444043-29444261,29444374-29444440,29444883-29445288,
           29445669-29445816,29445903-29446063,29446320-29446419,
           29446522-29446596,29446677-29446811,29446921-29447013,
           29447475-29447657,29447738-29447842,29448614-29448772,
           29449142-29449186,29449296-29449517,29449775-29449881,
           29449971-29450027,29450132-29450213,29450291-29450455
          Length = 947

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 374 KQLEKWSWSQPEMQHKRTMVQW 309
           K LE+WS +     H++ +VQW
Sbjct: 343 KDLEEWSENPESFHHEQNLVQW 364


>06_01_0569 +
           4019254-4021996,4022121-4022272,4022356-4022427,
           4022521-4022673,4022749-4022912,4022990-4023137,
           4023530-4023652,4023774-4023861,4023951-4024129
          Length = 1273

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 425 ATYS-AHGAPAIAAYSAHATPAVATYS 502
           A+Y+ +H  P +A+Y+ H  P VA+Y+
Sbjct: 283 ASYAPSHQPPQVASYAPHQQPQVASYA 309


>04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095
          Length = 597

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 14/124 (11%)
 Frame = -1

Query: 566 WRQPQVQRKLQRERSP*RQQARSTSQLRV*RGR-------SMRRWLEHREQSM--SRKMV 414
           WRQ  V+++ Q++R+P +QQ     Q    R +       S    L+H+  S    R+  
Sbjct: 322 WRQQMVEQQQQQQRAPMQQQRMPVVQQAAPRKQRVFTVTVSRAYALQHQRGSTPEERRAS 381

Query: 413 IHERLWTS-KKIL----RKQLEKWSWSQPEMQHKRTMVQWRTNMLGQ*HMSMLVQQHKRR 249
           + ER+    +K++    R++LE+       +  +R  ++       Q  + + +QQ +RR
Sbjct: 382 VRERVRLELQKVVAFLQRRELEQRYERAAALLRQRAQLE---QAALQEQLKLEMQQMRRR 438

Query: 248 QEQQ 237
           QEQ+
Sbjct: 439 QEQR 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,788,895
Number of Sequences: 37544
Number of extensions: 248487
Number of successful extensions: 1020
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)