Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4048
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z81529-3|CAB04300.1|  224|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z81529-1|CAB04294.1|  224|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical
           protein W09G3.6 protein.
          Length = 1125

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 284 HMSMLVQQHKRRQEQQWS**RLEQHRRQRCGH 189
           +M M+ ++ +R+Q++ W   RL QH ++   H
Sbjct: 685 NMGMISEEMRRKQDEMWLDLRLTQHIKKHSSH 716


>Z81529-3|CAB04300.1|  224|Caenorhabditis elegans Hypothetical
           protein F35E8.4 protein.
          Length = 224

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = +1

Query: 289 WPSIFVRHCTIVRLCCISGCDQDHFSSCF--LSIFLLVHNRSWITIFRDILCSRCSSHRR 462
           W ++  + C      C  G   D  + C   LSI L V  + ++  +    C RCS+   
Sbjct: 115 WRTVIAQDCPSACGFCNEGGCVDAITDCGDDLSICLNVKMQDFVNQYCQKTCKRCSAATT 174

Query: 463 ILRPRYTRSCDV 498
           +  P  T +C V
Sbjct: 175 V-APPVTNNCTV 185


>Z81529-1|CAB04294.1|  224|Caenorhabditis elegans Hypothetical
           protein F35E8.1 protein.
          Length = 224

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = +1

Query: 289 WPSIFVRHCTIVRLCCISGCDQDHFSSCF--LSIFLLVHNRSWITIFRDILCSRCSSHRR 462
           W ++  + C      C  G   D  + C   LSI L V  + ++  +    C RCS+   
Sbjct: 115 WRTVIAQDCPSACGFCNEGGCVDAITDCGDDLSICLNVKMQDFVNQYCQKTCKRCSAATT 174

Query: 463 ILRPRYTRSCDV 498
           +  P  T +C V
Sbjct: 175 V-APPVTNNCTV 185


>AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical
           protein T21D12.11 protein.
          Length = 709

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 221 LEQHRRQRCGHRERCELSKKRP 156
           +E HRR+RC  ++RC  + + P
Sbjct: 320 VECHRRRRCSRKQRCHTTTQPP 341


>Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical
           protein F34D10.4 protein.
          Length = 692

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -2

Query: 142 TDGFSYHSRSRDSVAVSQGSSFRGDHQRGLRLQRTEQRS 26
           T  +   SRSR    V   ++FR  HQ G    R E RS
Sbjct: 339 TSHYELRSRSRGRATVPMNANFRAGHQTG-SSSRLESRS 376


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,268,794
Number of Sequences: 27780
Number of extensions: 195975
Number of successful extensions: 699
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)