Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4048
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.74 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.2  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   6.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.1  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.6 bits (51), Expect = 0.74
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 400 NRSWITIFRDILCSRCSSHRRILRPRYTRS 489
           NR +   FR+IL  RCS+   ++R  + +S
Sbjct: 431 NRDFRKPFREILYFRCSNLNHMMREEFYQS 460


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 392 SKKILR-KQLEKWSWSQPEMQHKRTMVQWRTNMLGQ*HMSMLVQQHKRRQEQQ 237
           S+K+L  K  E+    Q + QH++   Q +  +  Q       QQ +++Q+QQ
Sbjct: 403 SEKLLAFKMTEQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQ 455


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = -1

Query: 272  LVQQHKRRQEQQWS**RLEQHRRQRCGHRER 180
            +VQQ +++Q+QQ    + +Q ++Q+  H+ R
Sbjct: 1207 MVQQQQQQQQQQQQQQQQQQQQQQQQQHQAR 1237



 Score = 21.8 bits (44), Expect = 5.2
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = -1

Query: 392  SKKILRKQLEKWSWSQPEMQHKRTMVQWRTNMLGQ*HMSMLVQQHKRRQEQQ 237
            SK I+    +K    QP+ Q ++   Q       Q        Q +++Q+QQ
Sbjct: 1489 SKLIVDHSSQKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQ 1540



 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 266  QQHKRRQEQQWS**RLEQHRRQRCGHRER 180
            QQ +++Q+QQ    + +Q ++Q+   RER
Sbjct: 1211 QQQQQQQQQQQQQQQQQQQQQQQHQARER 1239


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -1

Query: 281  MSMLVQQHKRRQEQQWS 231
            M   V +HK++ +Q+W+
Sbjct: 1491 MIYFVVEHKKKNQQEWN 1507


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 449 EHREQSMSRKMVIHERLWTSKKILRKQLEKWSWSQP 342
           +H E+    + VI ER++ S+  L   +  +  S+P
Sbjct: 28  KHAERQEEYRCVICERVYCSRNSLMTHIYTYHKSRP 63


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 393 RPQPLMDHHLSRHTLLTVLQPSPHTPPTL 479
           RP P     + RH ++T++    H   TL
Sbjct: 133 RPLPNESQLIKRHPIVTIMGHVDHGKTTL 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,838
Number of Sequences: 438
Number of extensions: 2528
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)