Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4047
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.9  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    27   3.8  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    26   5.1  

>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 493 LNENETKGVQSLRMFEASEKTPKQLFSSLPFDYCTTHAECTY 618
           LN+N  +G+ +    +        ++S LP D  T+ AE  Y
Sbjct: 629 LNDNINEGLSTFPSIDIPASEADNVYSILPIDVSTSEAEGAY 670


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 393  HPSRVTYLPLKLMKINKKNQFKK 325
            H +R+T + L + K+NK N  KK
Sbjct: 1074 HATRITAIQLHMSKLNKSNSSKK 1096


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 113 KFHSICKNIIHHYSLSHLAVN 175
           KF+++C NI+H  +LS  ++N
Sbjct: 398 KFNNLCSNILHFRALSAYSLN 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,679,632
Number of Sequences: 5004
Number of extensions: 53402
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)