Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4047
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0458 + 3630218-3630274,3630383-3630507,3630635-3630710,363...    28   9.3  

>05_01_0458 +
           3630218-3630274,3630383-3630507,3630635-3630710,
           3630884-3630985,3631075-3631290,3632217-3632297,
           3633152-3633235,3633405-3633509,3634338-3634516,
           3634681-3634765,3634889-3635090,3635165-3635234,
           3635353-3635422,3635745-3635834,3636020-3636088,
           3636520-3636618,3636804-3636914
          Length = 606

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 542 PARRRLNSYLVAYLSIIAQHMLNVRITVLCTFKYN 646
           P  R L  YL+ +  ++ +   N+   VLC + YN
Sbjct: 523 PDERVLGLYLIRFAEVVEEACTNLLPNVLCEYLYN 557


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,455,915
Number of Sequences: 37544
Number of extensions: 279711
Number of successful extensions: 407
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)