Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4046
         (380 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-7|CAA90257.1|  740|Caenorhabditis elegans Hypothetical pr...    27   3.4  
U41509-1|AAA82628.2|  163|Caenorhabditis elegans Elongin c prote...    27   4.5  
AL023844-11|CAA19525.3|  489|Caenorhabditis elegans Hypothetical...    27   6.0  
Z82052-9|CAB04825.2|  338|Caenorhabditis elegans Hypothetical pr...    26   7.9  

>Z49967-7|CAA90257.1|  740|Caenorhabditis elegans Hypothetical
           protein F54C9.9 protein.
          Length = 740

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = +3

Query: 3   QAGP*RPDHRQTKTRAEPLPLSSPRTQQVTIKRYEHEVVVLFGG 134
           Q  P +P++   K+++E    S  + +++TIK YE ++V+  GG
Sbjct: 100 QDAPSKPNNNPKKSKSEK---SKKKDEKMTIKDYERKLVLEKGG 140


>U41509-1|AAA82628.2|  163|Caenorhabditis elegans Elongin c protein
           2 protein.
          Length = 163

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
 Frame = +3

Query: 21  PDHRQTKTRAEPLPLS---SPRTQQV-TIKRYEHEVVVLFGGVMLSRFVSLRESY 173
           PD ++T  + +P+P+S    PR++ V  +   +HE ++     M S+  SLRE +
Sbjct: 46  PDSQKTGAKPQPVPISGLEGPRSKYVKLVSNDDHEFIIKREVAMTSK--SLRELF 98


>AL023844-11|CAA19525.3|  489|Caenorhabditis elegans Hypothetical
           protein Y48A6B.10 protein.
          Length = 489

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 214 RPASPLPYPLQAAR*DSRRLTKRDSITPPNRTTTS 110
           RPA   P P+      + RLT  ++ITPP+  +TS
Sbjct: 300 RPAPQKP-PITIMLQSNSRLTANNTITPPSSASTS 333


>Z82052-9|CAB04825.2|  338|Caenorhabditis elegans Hypothetical
           protein T25E12.7 protein.
          Length = 338

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 8/34 (23%), Positives = 23/34 (67%)
 Frame = +3

Query: 36  TKTRAEPLPLSSPRTQQVTIKRYEHEVVVLFGGV 137
           + + ++P+PL + R Q++ I  +++  ++L+G +
Sbjct: 8   SSSSSKPVPLKTSRAQKIQILIFDNWKLILYGAI 41


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,861,325
Number of Sequences: 27780
Number of extensions: 98330
Number of successful extensions: 324
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)