Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4046
         (380 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   6.5  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          20   8.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    20   8.5  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -1

Query: 110 MLVSFDCHLLSSWAT*RKRFR 48
           M  S DC+   SW   R  F+
Sbjct: 49  MTYSMDCYFRQSWVDRRLAFQ 69


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 139 ITPPNRTTTSCSYL 98
           + PPNRT  S  Y+
Sbjct: 83  LLPPNRTINSVVYI 96


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 139 ITPPNRTTTSCSYL 98
           + PPNRT  S  Y+
Sbjct: 204 LLPPNRTINSVVYI 217


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,771
Number of Sequences: 438
Number of extensions: 1464
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)