Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4045
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 50 2e-07
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 42 6e-05
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 39 5e-04
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 37 0.002
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 35 0.008
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 35 0.008
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 34 0.011
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 32 0.045
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 31 0.14
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 29 0.42
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 28 0.73
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 28 0.97
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 28 0.97
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 27 1.3
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 27 2.2
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation... 27 2.2
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 27 2.2
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces... 26 3.0
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 26 3.0
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T... 26 3.0
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 26 3.0
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 26 3.9
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 26 3.9
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 25 5.2
SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subuni... 25 5.2
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 25 5.2
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 25 6.8
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 25 9.0
SPBC13G1.06c |isd11||iron sulfur cluster assembly protein Isd11|... 25 9.0
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.0
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 50.4 bits (115), Expect = 2e-07
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Frame = +2
Query: 50 CGRIFTRKQNIVSHMITVHLQGLGNEIRCRFC--SKTFTTGRNLKRHVNLLHNPNVEYPT 223
C F KQ + +H+ H + + C + F L+ H+ H P+
Sbjct: 151 CELRFATKQKLQNHVNRAHEKIISYSCPHESCVGHEGFEKWSQLQNHIREAH-----VPS 205
Query: 224 CDICKKVFKGKPYLVTHIQSMHKS---ERESIKCNM--CDKAYTNERNLKRHVDMFHGVK 388
C IC + FK +L H+ +H++ ER++ C M C K++T LK+H+ + H
Sbjct: 206 CSICGRQFKTAAHLRHHVV-LHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGN 264
Query: 389 GEHHCGLC 412
HC C
Sbjct: 265 MAFHCDSC 272
Score = 49.2 bits (112), Expect = 4e-07
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Frame = +2
Query: 32 LPECDLCGRIFTRKQNIVSHMITVHLQGLGNE--IRCRF--CSKTFTTGRNLKRHVNLLH 199
+P C +CGR F ++ H + +H L C C K+FT LK+H++++H
Sbjct: 203 VPSCSICGRQFKTAAHL-RHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIH 261
Query: 200 NPNVEYPTCDICKKVFKGKPYLVTHIQSMHKSERESIKCNMCDKAYTNERNLK 358
N+ + CD C F K L H+ ER + C K Y NE +K
Sbjct: 262 EGNMAF-HCDSCGTKFGYKHMLQRHL------ERGT--CKKAHKPYINECGIK 305
Score = 43.6 bits (98), Expect = 2e-05
Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 4/126 (3%)
Frame = +2
Query: 50 CGRIFTRKQNIVSHMITVHLQGLGNEIRCRFCSKTFTTGRNLKRHVNLLHNPNVEYPTC- 226
C F++ Q + SH+ H L + C F T + L+ HVN H + Y +C
Sbjct: 120 CDECFSKHQQLRSHISACHTHLLPYPCTYQDCELRFATKQKLQNHVNRAHEKIISY-SCP 178
Query: 227 -DIC--KKVFKGKPYLVTHIQSMHKSERESIKCNMCDKAYTNERNLKRHVDMFHGVKGEH 397
+ C + F+ L HI+ H C++C + + +L+ HV + E
Sbjct: 179 HESCVGHEGFEKWSQLQNHIREAHVP-----SCSICGRQFKTAAHLRHHVVLHQTTLEER 233
Query: 398 HCGLCP 415
CP
Sbjct: 234 KTYHCP 239
Score = 38.3 bits (85), Expect = 7e-04
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 4/117 (3%)
Frame = +2
Query: 41 CDL--CGRIFTRKQNIVSHMITVHLQGLGNEIRCRFCSKTFTTGRNLKRHVNLLHNPNVE 214
CD C + F RK ++ H H C F T ++L+RH+ + P
Sbjct: 55 CDYTGCSKAFYRKSHLKIHK-RCHTNVKPFSCHYDGCDAQFYTQQHLERHIEVHRKPKPY 113
Query: 215 YPTCDICKKVFKGKPYLVTHIQSMHKSERESIKCNM--CDKAYTNERNLKRHVDMFH 379
T + C + F L +HI + H + C C+ + ++ L+ HV+ H
Sbjct: 114 ACTWEGCDECFSKHQQLRSHISACH-THLLPYPCTYQDCELRFATKQKLQNHVNRAH 169
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 41.9 bits (94), Expect = 6e-05
Identities = 23/83 (27%), Positives = 39/83 (46%)
Frame = +2
Query: 179 RHVNLLHNPNVEYPTCDICKKVFKGKPYLVTHIQSMHKSERESIKCNMCDKAYTNERNLK 358
R ++ +P + C C K FK +L HI+S+H SE+ + C +C K ++ NL+
Sbjct: 410 RKTSVPRSPGGKSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFV-C-ICGKRFSRRDNLR 467
Query: 359 RHVDMFHGVKGEHHCGLCPKVYF 427
+H + C P Y+
Sbjct: 468 QHERLHVNASPRLACFFQPSGYY 490
Score = 36.3 bits (80), Expect = 0.003
Identities = 21/66 (31%), Positives = 29/66 (43%)
Frame = +2
Query: 119 GNEIRCRFCSKTFTTGRNLKRHVNLLHNPNVEYPTCDICKKVFKGKPYLVTHIQSMHKSE 298
G C CSK F +L+RH+ LH E P IC K F + L H + +H +
Sbjct: 420 GKSFVCPECSKKFKRSEHLRRHIRSLHTS--EKPFVCICGKRFSRRDNLRQH-ERLHVNA 476
Query: 299 RESIKC 316
+ C
Sbjct: 477 SPRLAC 482
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 38.7 bits (86), Expect = 5e-04
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Frame = +2
Query: 68 RKQNIVSHMITVHLQGLGNEIRCRF--CSKTFTTGRNLKRHVNLLHNPNVEYPTCDICKK 241
+ +N S + GN + C F C+K FT NLK H+N + N C ICKK
Sbjct: 551 KSENSSSSKAKSESKSQGNYV-CTFAGCNKRFTRAYNLKSHMNT--HTNYRPFQCSICKK 607
Query: 242 VFKGKPYLVTHIQSMHKSERESIKCNMCDKAYTNERNLKRH 364
F + H + +H + + C C++ + L RH
Sbjct: 608 SFARQHDKRRH-EQLHTGIK-AFACVTCNQRFARMDALNRH 646
Score = 35.1 bits (77), Expect = 0.006
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = +2
Query: 50 CGRIFTRKQNIVSHMITVHLQGLGNEIRCRFCSKTFTTGRNLKRHVNLLHNPNVEYPTCD 229
C + FTR N+ SHM T H +C C K+F + +RH L + ++ C
Sbjct: 577 CNKRFTRAYNLKSHMNT-HTN--YRPFQCSICKKSFARQHDKRRHEQL--HTGIKAFACV 631
Query: 230 ICKKVFKGKPYLVTHIQS 283
C + F L H +S
Sbjct: 632 TCNQRFARMDALNRHYKS 649
Score = 30.3 bits (65), Expect = 0.18
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +2
Query: 233 CKKVFKGKPYLVTHIQSMHKSERESIKCNMCDKAYTNERNLKRHVDMFHGVK 388
C K F L +H+ + H + R +C++C K++ + + +RH + G+K
Sbjct: 577 CNKRFTRAYNLKSHMNT-HTNYRP-FQCSICKKSFARQHDKRRHEQLHTGIK 626
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 143 CSKTFTTGRNLKRHVNLLHNPNVEYPTCDICKKVFKGKPYLVTHIQSMH 289
C K+FT +L+RH + NV+ +C C + F L H+Q MH
Sbjct: 33 CPKSFTRKEHLRRHERT--HENVKAFSCSFCNRAFARSDVLNRHVQQMH 79
Score = 33.5 bits (73), Expect = 0.020
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 215 YPTCDICKKVFKGKPYLVTHIQSMHKSERESIKCNMCDKAYTNERNLKRHVDMFH 379
Y T C K F K +L H + H++ + + C+ C++A+ L RHV H
Sbjct: 27 YCTYPDCPKSFTRKEHLRRH-ERTHENVK-AFSCSFCNRAFARSDVLNRHVQQMH 79
Score = 33.1 bits (72), Expect = 0.026
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 14 NRYGQPLPECDL--CGRIFTRKQNIVSHMITVHLQGLGNEIRCRFCSKTFTTGRNLKRHV 187
+R G P C C + FTRK+++ H T H C FC++ F L RHV
Sbjct: 19 HRLGDPRFYCTYPDCPKSFTRKEHLRRHERT-HENV--KAFSCSFCNRAFARSDVLNRHV 75
Query: 188 NLLH 199
+H
Sbjct: 76 QQMH 79
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +2
Query: 323 CDKAYTNERNLKRHVDMFHGVKGEHHCGLCPKVY 424
C K++T + +L+RH VK C C + +
Sbjct: 33 CPKSFTRKEHLRRHERTHENVKA-FSCSFCNRAF 65
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +2
Query: 41 CDLCGRIFTRKQNIVSHMITVHLQ 112
C C R F R + H+ +HLQ
Sbjct: 58 CSFCNRAFARSDVLNRHVQQMHLQ 81
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 34.7 bits (76), Expect = 0.008
Identities = 26/77 (33%), Positives = 33/77 (42%)
Frame = +2
Query: 50 CGRIFTRKQNIVSHMITVHLQGLGNEIRCRFCSKTFTTGRNLKRHVNLLHNPNVEYPTCD 229
C + RK N+ SH+ T HL RC C F +LKRH+ +H Y C+
Sbjct: 450 CNKRIARKYNVESHIQT-HLSD--RPYRCDLCKAGFVRHHDLKRHLR-IHENGRPY-VCE 504
Query: 230 ICKKVFKGKPYLVTHIQ 280
C K F L H Q
Sbjct: 505 -CLKRFNRLDALNRHKQ 520
Score = 31.1 bits (67), Expect = 0.10
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 233 CKKVFKGKPYLVTHIQSMHKSERESIKCNMCDKAYTNERNLKRHV 367
C K K + +HIQ+ H S+R +C++C + +LKRH+
Sbjct: 450 CNKRIARKYNVESHIQT-HLSDRP-YRCDLCKAGFVRHHDLKRHL 492
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 34.7 bits (76), Expect = 0.008
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = +2
Query: 224 CDICKKVFKGKPYLVTHIQSMHKSERESIKCNMCDKAYTNERNLKRHVDMFHGVK 388
CD C K F L H ++ H S+ E I C C+ + LKRH+ FH K
Sbjct: 33 CDQCAKRFTRHENLTRH-KACH-SKAEPIPCPYCEIKCKRKDLLKRHIQRFHNDK 85
Score = 34.7 bits (76), Expect = 0.008
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +2
Query: 41 CDLCGRIFTRKQNIVSHMITVHLQGLGNEIRCRFCSKTFTTGRNLKRHVNLLHN 202
CD C + FTR +N+ H H + I C +C LKRH+ HN
Sbjct: 33 CDQCAKRFTRHENLTRHK-ACHSK--AEPIPCPYCEIKCKRKDLLKRHIQRFHN 83
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 34.3 bits (75), Expect = 0.011
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 224 CDICKKVFKGKPYLVTHIQSMHKSERESIKCN--MCDKAYTNERNLKRHV 367
C CK+VF + + V HI+S H E+ +C+ C K +T L RHV
Sbjct: 6 CPFCKRVFHRQEHQVRHIRS-HTGEK-PFECSYPSCKKRFTRRDELIRHV 53
Score = 31.9 bits (69), Expect = 0.060
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = +2
Query: 38 ECDLCGRIFTRKQNIVSHMITVHLQGLGNEIRCRFCSKTFTTGRNLKRHV 187
EC C R+F R+++ V H I H E C K FT L RHV
Sbjct: 5 ECPFCKRVFHRQEHQVRH-IRSHTGEKPFECSYPSCKKRFTRRDELIRHV 53
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 32.3 bits (70), Expect = 0.045
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +2
Query: 38 ECDL--CGRIFTRKQNIVSHMITVHLQGLGNEIRCRFCSKTFTTGRNLKRHVNLLH 199
+CD C + FTRK++ H + H C CS +FT L RHVN H
Sbjct: 18 KCDFQGCTKSFTRKEHARRHFRS-HTNS--KAFICPHCSSSFTRSDVLNRHVNQKH 70
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 30.7 bits (66), Expect = 0.14
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 44 DLCGRIFTRKQNIVSHMITVHLQGLGNEIRCRFC--SKTFTTGRNLKRHVNLLH 199
++C +F+R +++ H T+H + RC C + F+ L RH+ + H
Sbjct: 583 EICNTVFSRTYDLIRHQDTIHAK-TRPVFRCEICGDQRHFSRHDALVRHLRVKH 635
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 29.1 bits (62), Expect = 0.42
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Frame = +2
Query: 77 NIVSHMITVHLQGLGN--EIRCRFCSK 151
+I+S M T+ + G+G+ E+RCR C+K
Sbjct: 1147 SIISIMSTISMNGVGSASEVRCRSCAK 1173
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 28.3 bits (60), Expect = 0.73
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -1
Query: 383 RHGTCRRASSSCARLYKLYRTCYT*SIPSRTCACSGC 273
RHGTC R +++ C T S+ S + C C
Sbjct: 88 RHGTCESKCGHIFRKGEVFYRCKTCSVDSNSALCVKC 124
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 27.9 bits (59), Expect = 0.97
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 32 LPECDLCGRIFTRKQNIVSHMITVH 106
+PECD R FTR + HM TVH
Sbjct: 110 VPECD---RSFTRSDALAKHMRTVH 131
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 27.9 bits (59), Expect = 0.97
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 29 PLP-ECDLCGRIFTRKQNIVSHMITVHLQGLGNEIRCRFCSKTFTTGRNLKRHVNLLHNP 205
P P +C LC + F R ++ H+ T H + C+K F+ L RH + N
Sbjct: 23 PRPYKCPLCTKAFYRLEHQTRHIRT-HTGEKPHVCTFPGCAKRFSRSDELTRHARIHTNA 81
Query: 206 N 208
N
Sbjct: 82 N 82
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Frame = +2
Query: 134 CRFCSKTFTTGRNLKRHVNLLHNPNVEYPTCDI------CKKVFKGKPYLVTHIQSMHKS 295
C C++ F +LKRH+ H + +I C + F + L+ H Q +H++
Sbjct: 72 CETCTRAFARLEHLKRHIR-SHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQKIHRN 130
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 122 NEIRCRFCSKTFTTGRNLKRHVNLLHN 202
+E C FC TFT ++L H HN
Sbjct: 56 HEFCCLFCDSTFTCLKDLWSHCKEAHN 82
>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
1|||Manual
Length = 321
Score = 26.6 bits (56), Expect = 2.2
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +2
Query: 59 IFTRKQNIVSHMITVHLQGLGNEIRCRFCSKTFTTGRNLKRHV-NLLHNPNVEYPTCDIC 235
I R + H+I LG S+ GR ++ + N+L VEY TC C
Sbjct: 217 ISKRMHRSLDHVIQFLFAELGTSGSVDGSSRLIIKGRFQQKQIENVLRRYIVEYVTCKTC 276
Query: 236 K 238
K
Sbjct: 277 K 277
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 233 CKKVFKGKPYLVTHIQSMHKSER--ESIKCNMCDKAYTNER 349
C ++ G P L +H+Q MH + E+ KC D Y +R
Sbjct: 632 CGELLLGTPLLHSHLQEMHIFPQILETGKCRWSDCKYEIQR 672
>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3
Query: 216 YSTFGLCSKFTCRFK 172
Y+ FGLC F C FK
Sbjct: 434 YNEFGLCKSFICLFK 448
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 229 HLQESVQRKTVLGD-SHPEHAQVREGIDQV*HVR*SLYKRAQLEEAR 366
H ES ++T S P H ++ +++ HVR + K QL+E R
Sbjct: 550 HSSESHSKRTTQQPKSTPNHTNIKVKSERLQHVRMAQQKAEQLDEER 596
>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/65 (23%), Positives = 30/65 (46%)
Frame = +2
Query: 167 RNLKRHVNLLHNPNVEYPTCDICKKVFKGKPYLVTHIQSMHKSERESIKCNMCDKAYTNE 346
+NL++H+N + NV++ C K ++ + S+ R + C+ C +T E
Sbjct: 232 QNLRKHLNTPNQANVDFRATCFCHKKVLDIGFVCSVCLSIFCEPR--VHCSTCHTKFTVE 289
Query: 347 RNLKR 361
K+
Sbjct: 290 PMSKK 294
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 3.0
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +2
Query: 23 GQPLPECDLCG 55
GQPLP+C +CG
Sbjct: 822 GQPLPKCSVCG 832
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.8 bits (54), Expect = 3.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 302 ESIKCNMCDKAYTNERNLKRHVD 370
E I+ N+CD ++ + RHVD
Sbjct: 208 EKIRSNICDAVQSSRNGICRHVD 230
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.8 bits (54), Expect = 3.9
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = +2
Query: 128 IRCRFCSKTFTTGRNLKRHVNLLHNPNVEY 217
+RC F ++ TT + + R++ ++ P ++Y
Sbjct: 898 LRCFFKTEFITTLKRINRNIQVIVGPTIQY 927
>SPAC1851.03 |ckb1||CK2 family regulatory subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Frame = +2
Query: 212 EYPTCDI--CKKVF-KGKPYLVTHIQSMHKSERESIKCNMCDKAYTNERNLKRHVD 370
+Y CD C +V G+P L + + ++ + C C+ YT + +D
Sbjct: 104 KYKKCDFGHCPRVLCNGQPMLPVGLSDIAHTKSVKLYCPRCEDVYTPKSQRHASID 159
>SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subunit
Rpa12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 119
Score = 25.4 bits (53), Expect = 5.2
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +2
Query: 188 NLLHNPNVEYPTCDICKKVFKGKPY 262
NLL + ++ TCD C+ V+ + +
Sbjct: 15 NLLESTTAQWTTCDQCQSVYPSEQF 39
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 323 CDKAYTNERNLKRH 364
CDKAY N+ LK H
Sbjct: 357 CDKAYKNQNGLKYH 370
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 296 ERESIKCNMCDKAYTNERNLKRH 364
E + +C +C K Y N LK H
Sbjct: 395 ENKPYRCEVCSKRYKNLNGLKYH 417
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +3
Query: 15 IVTVNR-CPNATSAAGSSLGNR 77
++T N+ NA SAAG LGNR
Sbjct: 802 VMTTNQDAENALSAAGKQLGNR 823
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 122 NEIRCRFCSKTFTTGRNLKRHVN 190
N I C C+K F + L+ H N
Sbjct: 268 NPIMCMVCNKNFRSQNQLENHEN 290
>SPBC13G1.06c |isd11||iron sulfur cluster assembly protein
Isd11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 102
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 205 ERRVPDLRHLQESVQRKTVLGDSHPEHAQVREGID 309
E+ + D L E +QR++++ + + V EGID
Sbjct: 51 EQGIKDSEKLLEIIQRQSIINGMYNKRNLVVEGID 85
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 233 CKKVFKGKPYLVTHIQSMHKSERESIK 313
C K+F G ++ HI HK + IK
Sbjct: 481 CAKLFLGPEFVRKHINKKHKDWLDHIK 507
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,074,290
Number of Sequences: 5004
Number of extensions: 41540
Number of successful extensions: 189
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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