Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4042
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    27   2.2  
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy...    26   3.8  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   5.0  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    25   5.0  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   6.7  
SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Schi...    25   8.8  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    25   8.8  

>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 172 AVSPMLTMPLARAVLRRIFHRIGN 101
           A+SPM++ PL+    RR+  ++GN
Sbjct: 96  AISPMISAPLSEVFGRRMLLQVGN 119


>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 240 SAGESHIRVVISTGIRTMTLSTHSK 314
           SAG+SHI +V ++G + +T   + K
Sbjct: 103 SAGQSHINIVTASGAKKLTNDLYIK 127


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 279  GIRTM-TLSTHSKRARVGSTRGGISSRCWGGTSPCELSLL 395
            GIR+  + +TH    ++ + + G     + GT+PC L+ L
Sbjct: 1111 GIRSQRSFTTHIDLKKLTTRQNGAKKSSYTGTNPCVLNYL 1150


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 446 TWSWRSARPEERERECDPSSA 508
           T SW+++R EE +RE D ++A
Sbjct: 13  TESWKNSRFEELQREADEAAA 33


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +2

Query: 332 HPRRDLIAVLGRDLSLRAVIARMLEDEKFRGRPWPDFATWS 454
           HP   L+  LG   S+ A ++ +L D      PW   A  S
Sbjct: 530 HPFGMLVGELGSMDSMSAQVSALLHDTGVHSEPWEGSAATS 570


>SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 96  VAFPIRWKILRSTALARGIVSIGDTACSHSALRRSSRGMAASGGTCG 236
           ++FP+ +K      +   I +IG TA  H+ L  + +G+AA   T G
Sbjct: 191 LSFPVGFKNGTDGTVGVAIDAIGATAHPHTMLGVTKQGLAAITMTRG 237


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 275 TDDNPDVALSCRPSTGTSRS 216
           TD  PDV  +  PST TS S
Sbjct: 508 TDAKPDVTSNGEPSTATSES 527


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,081,280
Number of Sequences: 5004
Number of extensions: 38722
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)