Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4042
         (514 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL163279-2|CAB90452.1| 2295|Homo sapiens homolog to cAMP respons...    31   3.1  
AJ238214-1|CAC37033.2| 2269|Homo sapiens hypothetical protein pr...    31   3.1  
AB080587-1|BAD74072.1| 2199|Homo sapiens WD repeat protein WDR9-...    31   3.1  
AB080586-1|BAD74071.1| 2269|Homo sapiens WD repeat protein protein.    31   3.1  
U15177-1|AAA75509.1|  404|Homo sapiens unknown protein.                30   5.5  
U38847-1|AAC50379.1| 1621|Homo sapiens TAR RNA loop binding prot...    29   7.2  
AL355472-5|CAI22931.1| 1621|Homo sapiens Tar (HIV-1) RNA binding...    29   7.2  
AL136124-1|CAI22828.1| 1621|Homo sapiens Tar (HIV-1) RNA binding...    29   7.2  
X14487-1|CAA32649.1|  593|Homo sapiens protein ( Human gene for ...    29   9.5  
BC034697-1|AAH34697.1|  584|Homo sapiens keratin 10 (epidermolyt...    29   9.5  

>AL163279-2|CAB90452.1| 2295|Homo sapiens homolog to cAMP response
            element binding and betadogene protein.
          Length = 2295

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +3

Query: 129  STALARGIVSIGDTACSHSALRRSSRGMAASGGTCGRSAGESHIRVVISTGIRTMTL-ST 305
            S  ++ G+ S   +  + S+ RR       +G T   S  E  +   +S+   + +  S 
Sbjct: 1519 SAGISSGVTSGDSSDSAESSERRKRNRPITNGSTLSESEVEDSLATSLSSSASSSSEESK 1578

Query: 306  HSKRARVGSTRGGIS 350
             S RAR  S+R G+S
Sbjct: 1579 ESSRARESSSRSGLS 1593


>AJ238214-1|CAC37033.2| 2269|Homo sapiens hypothetical protein
            protein.
          Length = 2269

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +3

Query: 129  STALARGIVSIGDTACSHSALRRSSRGMAASGGTCGRSAGESHIRVVISTGIRTMTL-ST 305
            S  ++ G+ S   +  + S+ RR       +G T   S  E  +   +S+   + +  S 
Sbjct: 1493 SAGISSGVTSGDSSDSAESSERRKRNRPITNGSTLSESEVEDSLATSLSSSASSSSEESK 1552

Query: 306  HSKRARVGSTRGGIS 350
             S RAR  S+R G+S
Sbjct: 1553 ESSRARESSSRSGLS 1567


>AB080587-1|BAD74072.1| 2199|Homo sapiens WD repeat protein WDR9-form2
            protein.
          Length = 2199

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +3

Query: 129  STALARGIVSIGDTACSHSALRRSSRGMAASGGTCGRSAGESHIRVVISTGIRTMTL-ST 305
            S  ++ G+ S   +  + S+ RR       +G T   S  E  +   +S+   + +  S 
Sbjct: 1493 SAGISSGVTSGDSSDSAESSERRKRNRPITNGSTLSESEVEDSLATSLSSSASSSSEESK 1552

Query: 306  HSKRARVGSTRGGIS 350
             S RAR  S+R G+S
Sbjct: 1553 ESSRARESSSRSGLS 1567


>AB080586-1|BAD74071.1| 2269|Homo sapiens WD repeat protein protein.
          Length = 2269

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +3

Query: 129  STALARGIVSIGDTACSHSALRRSSRGMAASGGTCGRSAGESHIRVVISTGIRTMTL-ST 305
            S  ++ G+ S   +  + S+ RR       +G T   S  E  +   +S+   + +  S 
Sbjct: 1493 SAGISSGVTSGDSSDSAESSERRKRNRPITNGSTLSESEVEDSLATSLSSSASSSSEESK 1552

Query: 306  HSKRARVGSTRGGIS 350
             S RAR  S+R G+S
Sbjct: 1553 ESSRARESSSRSGLS 1567


>U15177-1|AAA75509.1|  404|Homo sapiens unknown protein.
          Length = 404

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
 Frame = +3

Query: 171 ACSHSALRRSSRGMAA--SGGTCGRSAGESHIRVVISTGIRTMTLSTHSKRARVGSTRGG 344
           AC   A R S+ G A+  +  +  R        +    G R  T  T  +R      R G
Sbjct: 143 ACGPRAPRSSALGSASVPTASSRLRDGPPPGAEIPTLAGERXATPGTKEERGACAGARPG 202

Query: 345 ISSRCWGGTSPCELSLLAC 401
           +S RC G  +  +   LAC
Sbjct: 203 VSLRCQGKRAWAKFRTLAC 221


>U38847-1|AAC50379.1| 1621|Homo sapiens TAR RNA loop binding protein
           protein.
          Length = 1621

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = +3

Query: 174 CSHSALRRSSRGMAASGGTCGRSAGESHIRVVISTGIRTMTLSTHSKRARVGSTRGGISS 353
           C  +ALR    G+AA G + G    E  + +V+S     +       RAR     G  + 
Sbjct: 202 CGGAALRAVWGGLAAPGASLGSGRVEEKL-LVLSALAEKLLPEPGGDRARGAREAGPDAR 260

Query: 354 RCW 362
           RCW
Sbjct: 261 RCW 263


>AL355472-5|CAI22931.1| 1621|Homo sapiens Tar (HIV-1) RNA binding
           protein 1 protein.
          Length = 1621

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = +3

Query: 174 CSHSALRRSSRGMAASGGTCGRSAGESHIRVVISTGIRTMTLSTHSKRARVGSTRGGISS 353
           C  +ALR    G+AA G + G    E  + +V+S     +       RAR     G  + 
Sbjct: 202 CGGAALRAVWGGLAAPGASLGSGRVEEKL-LVLSALAEKLLPEPGGDRARGAREAGPDAR 260

Query: 354 RCW 362
           RCW
Sbjct: 261 RCW 263


>AL136124-1|CAI22828.1| 1621|Homo sapiens Tar (HIV-1) RNA binding
           protein 1 protein.
          Length = 1621

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = +3

Query: 174 CSHSALRRSSRGMAASGGTCGRSAGESHIRVVISTGIRTMTLSTHSKRARVGSTRGGISS 353
           C  +ALR    G+AA G + G    E  + +V+S     +       RAR     G  + 
Sbjct: 202 CGGAALRAVWGGLAAPGASLGSGRVEEKL-LVLSALAEKLLPEPGGDRARGAREAGPDAR 260

Query: 354 RCW 362
           RCW
Sbjct: 261 RCW 263


>X14487-1|CAA32649.1|  593|Homo sapiens protein ( Human gene for
           acidic (type I) cytokeratin 10. ).
          Length = 593

 Score = 29.1 bits (62), Expect = 9.5
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +3

Query: 153 VSIGDTACSHSALRRSSRGMAASGGTCGRSAGESHIRVVISTGIRTMTLSTHSKRARVGS 332
           +S+  ++  H +  RS  G    GG CG   G S +R+  S G  ++     S     GS
Sbjct: 1   MSVRYSSSKHYSSSRSGGG--GGGGGCGGGGGVSSLRISSSKG--SLGGGFSSGGFSGGS 56

Query: 333 -TRGGISSRCWGGTS 374
            +RG     C+GG+S
Sbjct: 57  FSRGSSGGGCFGGSS 71


>BC034697-1|AAH34697.1|  584|Homo sapiens keratin 10 (epidermolytic
           hyperkeratosis; keratosis palmaris et plantaris)
           protein.
          Length = 584

 Score = 29.1 bits (62), Expect = 9.5
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +3

Query: 153 VSIGDTACSHSALRRSSRGMAASGGTCGRSAGESHIRVVISTGIRTMTLSTHSKRARVGS 332
           +S+  ++  H +  RS  G    GG CG   G S +R+  S G  ++     S     GS
Sbjct: 1   MSVRYSSSKHYSSSRSGGG--GGGGGCGGGGGVSSLRISSSKG--SLGGGFSSGGFSGGS 56

Query: 333 -TRGGISSRCWGGTS 374
            +RG     C+GG+S
Sbjct: 57  FSRGSSGGGCFGGSS 71


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,183,177
Number of Sequences: 237096
Number of extensions: 1742394
Number of successful extensions: 5540
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5539
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4820001670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)