Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4042
         (514 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    27   6.0  
AL023828-22|CAA19467.2|  272|Caenorhabditis elegans Hypothetical...    27   6.0  

>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
            protein T19D12.1 protein.
          Length = 1844

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +3

Query: 156  SIGDTACSHSALRRSSRGMAASGGTCGRSAGE---SHIRVVISTGIRTMTLSTHSKRARV 326
            SIG TA   S+  +     +  G T G S+ +   S   V  STG  +   ST    + V
Sbjct: 1478 SIGSTAPQGSSSIQPIASSSTMGSTAGSSSPQPTVSSTSVPSSTGATSSGSSTTVGSSTV 1537

Query: 327  GSTRGGISS 353
            G+T+  +SS
Sbjct: 1538 GATQTSVSS 1546


>AL023828-22|CAA19467.2|  272|Caenorhabditis elegans Hypothetical
           protein Y17G7B.19 protein.
          Length = 272

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 501 EGSHSLSRSSGLAERHDQVAKSGHGLPR 418
           EG H LS+SSG   + + +   GH  PR
Sbjct: 177 EGYHPLSKSSGKCPKSNGMCHRGHCCPR 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,942,343
Number of Sequences: 27780
Number of extensions: 243507
Number of successful extensions: 733
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)