Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4040
(720 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 29 0.88
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar... 28 1.2
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 27 2.0
SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo... 27 3.6
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 26 4.7
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz... 26 4.7
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 26 6.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 6.2
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 26 6.2
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 25 8.2
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 8.2
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 8.2
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 25 8.2
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 28.7 bits (61), Expect = 0.88
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Frame = +1
Query: 586 PESCTVSSPDPEPIVEKTEVSPEPQI-----EEPEKTQPELTPNTVEVP 717
PE+ +V P P+ + P+P + E P QP + P EVP
Sbjct: 569 PEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVP 617
>SPBC2F12.11c |rep2||transcriptional activator
Rep2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 219
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/74 (24%), Positives = 29/74 (39%)
Frame = +1
Query: 412 NSGPAISLEEAVSRSTLNPLAAEFVPSQSRLPTHSXXXXXXXXXXXXLPVQVQESRDSPE 591
N+ P + S NP + V S S + + + LP+Q SP
Sbjct: 14 NNPPTYPWSSPILSSIANPSLCDIVSSPSSVSSFASSDDFAFMNAYCLPIQQNHQFGSP- 72
Query: 592 SCTVSSPDPEPIVE 633
+SP+ +P+VE
Sbjct: 73 --VAASPNQQPLVE 84
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +2
Query: 446 SRDQP*TPWLQNLYRANQGYQHTANRLQLQKRRQNNYQFKCKNQEIVQRVVQS 604
SR P +P++QN YR + Q N + +Q + + +QR Q+
Sbjct: 521 SRMTPQSPYMQNYYRPHAQMQDQNNMMSYMLSQQKAMEIAKSREMAIQRNTQT 573
>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +1
Query: 553 LPVQVQESRDSPESCTVSSPDPEPIVEKTEVSPEPQIEEPEKTQPELTPNTV 708
+P +Q + P++ + D + I+ T +S + +PE Q L NT+
Sbjct: 155 MPAVLQTMKKYPKAEWIWLLDQDAIITNTHLSLQDSFLKPENLQKTLITNTI 206
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +1
Query: 553 LPVQVQESRDSPESCTVSSPDPEPIVEKTEVSPEPQIEEPEKTQP 687
L V++ + R SP + P P ++ + + P +PE T+P
Sbjct: 124 LTVRIIDHRQSPSADQTVQPQPGSTNQQQQNNTNPINNQPEDTKP 168
>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 451
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 325 CIEAMLEDEQRERQNRPVTNGHKHYPTTSNSGPAISLEEAVSRSTLNPLA 474
C + ED E ++ V +G YP N+ + + EAV S L +A
Sbjct: 229 CSMYVHEDADMELASKLVLDGKTDYPAACNAIETLLINEAVLSSHLPKIA 278
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +1
Query: 592 SCTVSSPDPEPIVEKTEVSPEPQIEEPEKTQPELTPNTVE 711
+C PD ++ KTE + + EPE EL P ++
Sbjct: 139 TCREKYPDKYSLLTKTECKLDYLLTEPELQDQELLPRLLK 178
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 631 EKTEVSPEPQIEEPEKTQPELTP 699
E+ + P PQ PE T+P L P
Sbjct: 753 EEEDEGPPPQPARPESTRPALAP 775
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 580 DSPESCT-VSSPDPEPIVEKTEVSPEPQIEEPEKTQ 684
++P S +SS +PE + +K E P P I + +K+Q
Sbjct: 74 ENPSSLKYLSSINPEDLGKKVEKGPRPDIYDLKKSQ 109
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 580 DSPESCTVSSPDPEPIVEKTEVSPEPQIEEPEKTQPELT-PNTV 708
++ S V+ +PEPI E+ S + + EEPE+ + + P T+
Sbjct: 478 EAERSVKVTKVEPEPIDEEEAFSDDEE-EEPEEIKERIAIPKTL 520
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 234 ILRLSWNWRIRCWWIIGPGHYKSSWHRSSRYVYR 133
ILR+S + + ++I+ G+Y W YV R
Sbjct: 529 ILRMSQQLKNKIYYILSKGNYFVDWSICDEYVKR 562
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +1
Query: 583 SPESCTVSSPDPEPIVEKTE-VSPEPQIEEPE--KTQPELTPN 702
S E +V +P+PEP++ K + +P+ P K +P+ T N
Sbjct: 19 SKELISVHNPNPEPVIFKVKTTAPKHYCVRPNSGKIEPKSTVN 61
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 8.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 625 IVEKTEVSPEPQIEEPEKTQPE 690
+VE+ + E ++EEP +T PE
Sbjct: 496 VVEQAYIVEEQEVEEPVETSPE 517
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.308 0.128 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,573,652
Number of Sequences: 5004
Number of extensions: 47742
Number of successful extensions: 143
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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