Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4039
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1026 + 30214437-30214937                                        239   2e-63
02_05_0416 + 28791512-28792012                                        235   2e-62
11_04_0079 - 13284869-13284929,13285518-13285639,13285749-132858...    31   1.2  
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414           29   2.9  
03_06_0776 - 36176390-36177589                                         29   3.8  
06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338     28   6.6  
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545...    28   8.7  

>04_04_1026 + 30214437-30214937
          Length = 166

 Score =  239 bits (585), Expect = 2e-63
 Identities = 113/163 (69%), Positives = 140/163 (85%), Gaps = 1/163 (0%)
 Frame = +3

Query: 99  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 275
           MPPK DP ++  V +R  GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1   MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 276 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVVGIAKIMRNR 455
           V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DV+ IA+IMRNR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNR 120

Query: 456 SMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTI 584
           SMA+ ++G+VKEILGT  SVGCTV+G+ P DL  +I+ G + I
Sbjct: 121 SMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGEVEI 163


>02_05_0416 + 28791512-28792012
          Length = 166

 Score =  235 bits (576), Expect = 2e-62
 Identities = 111/163 (68%), Positives = 139/163 (85%), Gaps = 1/163 (0%)
 Frame = +3

Query: 99  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 275
           MPPK DP ++  V +R  GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1   MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 276 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVVGIAKIMRNR 455
           V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DV+ IA++MR R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARVMRPR 120

Query: 456 SMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTI 584
           SMA+ ++G+VKEILGT  SVGCTV+G+ P DL  +I+ G + I
Sbjct: 121 SMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGEVEI 163


>11_04_0079 -
           13284869-13284929,13285518-13285639,13285749-13285820,
           13286048-13286200,13289510-13289709,13289745-13289947,
           13289991-13290181
          Length = 333

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 577 KAPLLMSSIRSCGGLPSTVHPTDCAVPRISF 485
           +APL   S+RSCG L   + P + ++PR+ +
Sbjct: 120 QAPLSPKSVRSCGPLKLVIEPYNGSLPRLHY 150


>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
          Length = 522

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 255 WKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQ 383
           W    + V   V +    + V+P+A A +IRA+ + P  R++Q
Sbjct: 33  WYSYLVDVDADVDDDMISLRVLPNARAALIRAVADAPGRREEQ 75


>03_06_0776 - 36176390-36177589
          Length = 399

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +3

Query: 381 QKNIKHNGNISLEDVVGIAKIMRNRSMARY 470
           +K+I++ G++ LE    + K+M +RSM RY
Sbjct: 113 EKSIQNIGSLELERNAAVEKLMSSRSMHRY 142


>06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338
          Length = 740

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 21/74 (28%), Positives = 39/74 (52%)
 Frame = -1

Query: 590 FINGQSSAVDVINKIMWRPALHSTSN*LCCAKNLFY*ARKVPGH*SVSHDLRNADYIFKG 411
           F++  +  + ++N I++RPA+ S +  +C A  +F  A         +  L+ + YIF G
Sbjct: 412 FMSSIALIILLVNPILYRPAIRSYALSVCTAVGMF--ALMCAYAAGSTQHLKTSIYIF-G 468

Query: 410 DVAVVFDIFLLFTV 369
            VA+V  I +L  +
Sbjct: 469 LVALVLFIMILVLI 482


>11_01_0669 -
           5454116-5454153,5454569-5454770,5454865-5455029,
           5455278-5456183
          Length = 436

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 96  KMPPK-FDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKV 224
           K+P + F  N +KIV ++C G EV         +G  G+  +K+
Sbjct: 369 KIPEEPFVSNHLKIVEIKCKGKEVMWVCKFLKTLGTFGIPLEKI 412


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,878,026
Number of Sequences: 37544
Number of extensions: 443783
Number of successful extensions: 1144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)