Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4038
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    25   4.5  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    25   6.0  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    25   7.9  

>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 339 NLRCSYLWAPVTTKH 383
           NLRC YL++ +TT H
Sbjct: 600 NLRCKYLFSKLTTLH 614


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +1

Query: 295 LKLRPYNSYLKLGGRI 342
           L+LRPY+ YLK+G ++
Sbjct: 384 LQLRPYSPYLKVGKQL 399


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = +3

Query: 213 HHPAYFSCEALMRFGLKGGAVTVLYSTVKIETLQLISQAGWQNLRCSYLWAPVTTKHHVG 392
           H P Y    A + F  KG +V VLY   K    +L S+     LR +++   V  KH  G
Sbjct: 149 HLPYYHPAVAGIAFHYKGSSVEVLYLVEKDFQRELSSRL----LRTAHMLLLVLHKHCKG 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,960,522
Number of Sequences: 5004
Number of extensions: 37259
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)