Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4038
(482 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41021-9|AAQ81276.1| 408|Caenorhabditis elegans Temporarily ass... 29 1.8
U41021-8|AAQ81275.1| 406|Caenorhabditis elegans Temporarily ass... 29 1.8
Z93374-5|CAB07557.1| 935|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z81455-3|CAB03808.2| 890|Caenorhabditis elegans Hypothetical pr... 28 4.1
AL032623-19|CAA21519.2| 890|Caenorhabditis elegans Hypothetical... 28 4.1
Z99268-1|CAB16466.1| 715|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z81573-4|CAB04627.1| 715|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z49908-10|CAA90103.1| 715|Caenorhabditis elegans Hypothetical p... 27 5.4
U70852-10|AAO91718.1| 505|Caenorhabditis elegans Hypothetical p... 27 5.4
U70852-9|ABB51183.1| 784|Caenorhabditis elegans Hypothetical pr... 27 5.4
U70852-8|ABB51182.1| 868|Caenorhabditis elegans Hypothetical pr... 27 5.4
EU068465-1|ABU49430.1| 715|Caenorhabditis elegans PRO-2 protein. 27 5.4
>U41021-9|AAQ81276.1| 408|Caenorhabditis elegans Temporarily
assigned gene nameprotein 24, isoform b protein.
Length = 408
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Frame = -2
Query: 472 IGRIGYRAPPRVFFFFF---YCLDG 407
IG G+ APP VF FFF YC G
Sbjct: 348 IGAFGHEAPPLVFKFFFWLGYCNSG 372
>U41021-8|AAQ81275.1| 406|Caenorhabditis elegans Temporarily
assigned gene nameprotein 24, isoform a protein.
Length = 406
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Frame = -2
Query: 472 IGRIGYRAPPRVFFFFF---YCLDG 407
IG G+ APP VF FFF YC G
Sbjct: 346 IGAFGHEAPPLVFKFFFWLGYCNSG 370
>Z93374-5|CAB07557.1| 935|Caenorhabditis elegans Hypothetical
protein C06C6.7 protein.
Length = 935
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 279 VLYSTVKIETLQLISQAGWQNLRCSYLWAPVTTKHH 386
+L +V + + ++S+ + + +YLW PV+T+ H
Sbjct: 346 ILKPSVPLSNINILSKFAVEMKKLNYLWNPVSTETH 381
>Z81455-3|CAB03808.2| 890|Caenorhabditis elegans Hypothetical
protein B0399.2 protein.
Length = 890
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 51 SIKI*AWNITEYERLALVNKYARFIESAQTKMDIRQHTYLY 173
S+K W+I E +A++NKY RF E K+ I LY
Sbjct: 507 SLKQPIWDIETDEVVAMMNKYLRFYERFAKKIYILAPHPLY 547
>AL032623-19|CAA21519.2| 890|Caenorhabditis elegans Hypothetical
protein B0399.2 protein.
Length = 890
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 51 SIKI*AWNITEYERLALVNKYARFIESAQTKMDIRQHTYLY 173
S+K W+I E +A++NKY RF E K+ I LY
Sbjct: 507 SLKQPIWDIETDEVVAMMNKYLRFYERFAKKIYILAPHPLY 547
>Z99268-1|CAB16466.1| 715|Caenorhabditis elegans Hypothetical
protein C07E3.2 protein.
Length = 715
Score = 27.5 bits (58), Expect = 5.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 315 LISQAGWQNLRCSYLWAPVTTKHH 386
+ S WQ ++C Y+W V K H
Sbjct: 401 IFSIYNWQMMQCMYMWVRVIAKAH 424
>Z81573-4|CAB04627.1| 715|Caenorhabditis elegans Hypothetical
protein C07E3.2 protein.
Length = 715
Score = 27.5 bits (58), Expect = 5.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 315 LISQAGWQNLRCSYLWAPVTTKHH 386
+ S WQ ++C Y+W V K H
Sbjct: 401 IFSIYNWQMMQCMYMWVRVIAKAH 424
>Z49908-10|CAA90103.1| 715|Caenorhabditis elegans Hypothetical
protein C07E3.2 protein.
Length = 715
Score = 27.5 bits (58), Expect = 5.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 315 LISQAGWQNLRCSYLWAPVTTKHH 386
+ S WQ ++C Y+W V K H
Sbjct: 401 IFSIYNWQMMQCMYMWVRVIAKAH 424
>U70852-10|AAO91718.1| 505|Caenorhabditis elegans Hypothetical
protein F45E4.7b protein.
Length = 505
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 282 LYSTVKIETLQLISQAGWQNL 344
+YS++ I TLQ+IS+ WQ L
Sbjct: 357 IYSSLGITTLQMISKVFWQGL 377
>U70852-9|ABB51183.1| 784|Caenorhabditis elegans Hypothetical
protein F45E4.7c protein.
Length = 784
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 282 LYSTVKIETLQLISQAGWQNL 344
+YS++ I TLQ+IS+ WQ L
Sbjct: 636 IYSSLGITTLQMISKVFWQGL 656
>U70852-8|ABB51182.1| 868|Caenorhabditis elegans Hypothetical
protein F45E4.7a protein.
Length = 868
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 282 LYSTVKIETLQLISQAGWQNL 344
+YS++ I TLQ+IS+ WQ L
Sbjct: 720 IYSSLGITTLQMISKVFWQGL 740
>EU068465-1|ABU49430.1| 715|Caenorhabditis elegans PRO-2 protein.
Length = 715
Score = 27.5 bits (58), Expect = 5.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 315 LISQAGWQNLRCSYLWAPVTTKHH 386
+ S WQ ++C Y+W V K H
Sbjct: 401 IFSIYNWQMMQCMYMWVRVIAKAH 424
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,134,693
Number of Sequences: 27780
Number of extensions: 218985
Number of successful extensions: 424
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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