Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4038
         (482 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    24   0.98 
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    24   0.98 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   5.2  

>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding
          protein ASP2 protein.
          Length = 142

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 51 IITV*CLQAAITVIRKV 1
          ++TV CL AA+TV+R +
Sbjct: 4  LVTVTCLLAALTVVRGI 20


>AF166497-1|AAD51945.1|  142|Apis mellifera putative
          odorant-binding protein ASP2 protein.
          Length = 142

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 51 IITV*CLQAAITVIRKV 1
          ++TV CL AA+TV+R +
Sbjct: 4  LVTVTCLLAALTVVRGI 20


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +3

Query: 294 VKIETLQLISQAGWQNLRCSYLWAP 368
           V+++ ++    +GW+ LR    W P
Sbjct: 440 VELQPVKSSKSSGWRKLRNIVHWTP 464


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,039
Number of Sequences: 438
Number of extensions: 3269
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)