Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4037
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    28   1.7  
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    26   5.1  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    26   5.1  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    26   6.7  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    26   6.7  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    26   6.7  
SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyc...    25   8.9  

>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 206 DERYDYLDVDDIFRNKRLVRNYVDCLINAQRCTPEGKALKRIL 334
           DER    + D IF ++ +   Y D  ++ ++ +P GK+L R +
Sbjct: 58  DERLFLTEDDIIFHDRSIQLGYFDPSLSERKQSPPGKSLHRFV 100


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 517 HHSRIWSNSERAFLANNTPAPSTAAFETSLRIYKPSTAGDVHV 645
           H  R+WS +    L    P  +T++ + S+RIY  +T   VHV
Sbjct: 289 HTGRLWSVAAHPML----PLFATSSQDKSVRIYNSNTYNLVHV 327


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 511 FQHHSRIWSNSERAFLANNTPAP--STAAFETSLRIYKPSTAGDVHVTTT 654
           ++   +IW   ER +L  ++PA   ST A +   R  +PS+  DVH + T
Sbjct: 84  YRDSPKIWLRRERQWLQRHSPAYRFSTPAAKRPRR--QPSSFLDVHASNT 131


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 407 RLKNEYPEEWAKLASRWDPTG 469
           + KN + E   K+AS WDP G
Sbjct: 89  KTKNVHLERVEKIASEWDPEG 109


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 325 FQGFSFWRAPLSIYQTIN 272
           FQG SFW AP  + QT++
Sbjct: 563 FQGSSFWMAPEVVKQTMH 580


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 464 TGDFTRYFEDYLAKEHFNTIPGS 532
           TGDF+   +D L +  + T PG+
Sbjct: 128 TGDFSTMLQDILQRRAYRTFPGA 150


>SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 290

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 349 YEMHPVY*KTKEDICESYSKAKKRVSRRMGEARL 450
           Y + P + KTKE +   Y   +KR+S+    +++
Sbjct: 206 YLIGPKFLKTKEAVLNQYRNKEKRISKTTDSSQM 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,658
Number of Sequences: 5004
Number of extensions: 61683
Number of successful extensions: 181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)