Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4037
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0297 + 14060687-14060787,14061341-14061473,14061566-140617... 31 1.00
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206... 30 1.7
04_04_1212 - 31786063-31786195,31786275-31786398,31786486-317865... 30 2.3
02_05_1336 + 35773629-35773856,35773931-35774085,35774217-357745... 29 3.0
11_04_0060 + 12984831-12985218,12985364-12985753,12986090-12986478 29 4.0
04_03_0029 - 9714031-9714072,9714196-9714219,9714343-9714406,971... 29 4.0
02_03_0052 - 14456925-14457176,14457277-14457437,14457843-144579... 29 5.3
10_08_0950 + 21764902-21765912 28 7.0
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120... 28 7.0
08_02_0138 - 13052183-13052784,13053019-13053337 28 9.3
02_05_1169 + 34656450-34656603,34657321-34657481,34657907-346579... 28 9.3
>04_03_0297 +
14060687-14060787,14061341-14061473,14061566-14061720,
14061850-14062042,14062130-14062248,14062332-14062548,
14062670-14062765,14062908-14063084,14063175-14063291,
14063398-14063564,14063680-14063904,14064052-14064373,
14064624-14064868,14065227-14065290,14065414-14065437,
14065561-14065602
Length = 798
Score = 31.1 bits (67), Expect = 1.00
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +2
Query: 302 TPEGKALKRILPEALRTKCIRCTERQKRTSVKVIRRL--KNEYPEEWAKLASRWDPTGDF 475
TP+ L R++P+A TKC E + T I R+ K E ++ + SR+D
Sbjct: 333 TPKILVLTRLIPDAKGTKCNVELEPVENTKYSHILRVPFKTEDGKDLRQWVSRFDIYPYL 392
Query: 476 TRYFEDYLAK 505
RY +D AK
Sbjct: 393 ERYAQDSCAK 402
>03_02_0910 +
12317493-12317960,12319678-12319734,12320592-12320666,
12321219-12321299,12321472-12321546,12321818-12321862,
12321975-12322064,12322153-12322254,12322366-12322420,
12324966-12325027,12325521-12325555,12325877-12326115,
12326219-12328035
Length = 1066
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +3
Query: 555 PCKQHPRPLHRR--LRDQPPYLQTLHRR*CPRHH 650
PC H RP + +PP +T RR PRHH
Sbjct: 828 PCHHHDRPWKSQEGAMQRPPVQETTRRRAPPRHH 861
>04_04_1212 - 31786063-31786195,31786275-31786398,31786486-31786597,
31786691-31786822,31786929-31787111,31787351-31787479,
31787618-31787788,31788142-31788244,31788628-31788737,
31789158-31789265,31789337-31789512,31790082-31790352,
31790524-31790738,31791042-31792574,31792665-31792728,
31793171-31793251
Length = 1214
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 292 SKVHARRKSLEKDIA*SVTYEMHPVY*KTKEDICESYSKAKKRVSRRMG 438
SK H R ++ DI + PV+ T E++ E S AKK + +R+G
Sbjct: 964 SKFHGIRNGIDPDIWDPYSDNFIPVH-YTSENVVEGKSAAKKALQQRLG 1011
>02_05_1336 +
35773629-35773856,35773931-35774085,35774217-35774549,
35774615-35774927,35776992-35777168,35777281-35777397,
35777532-35777698,35777800-35778024,35778127-35778448,
35778542-35778786,35778993-35779131,35779212-35779304,
35779509-35779577
Length = 860
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = +2
Query: 302 TPEGKALKRILPEALRTKCIRCTERQKRTSVKVIRRLKNEYPEEWAKLASRWDPTGDFTR 481
TP+ L R++PEA TKC E + + K L+ + E K+ +W D
Sbjct: 338 TPKILVLTRLIPEAKGTKC--NVELEPIENTKHSNILRVPFKTEDGKVLPQWVSRFDIYP 395
Query: 482 YFEDY 496
Y E Y
Sbjct: 396 YLERY 400
>11_04_0060 + 12984831-12985218,12985364-12985753,12986090-12986478
Length = 388
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +1
Query: 151 CVCCGGTGHQRND 189
C CGGTGH RND
Sbjct: 213 CDVCGGTGHSRND 225
>04_03_0029 -
9714031-9714072,9714196-9714219,9714343-9714406,
9714763-9715007,9715258-9715579,9715727-9715951,
9716067-9716233,9716340-9716456,9716547-9716723,
9716866-9716961,9717083-9717299,9717385-9717503,
9717591-9717783,9717913-9718067,9718160-9718292,
9718846-9718946
Length = 798
Score = 29.1 bits (62), Expect = 4.0
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +2
Query: 302 TPEGKALKRILPEALRTKCIRCTERQKRTSVKVIRRL--KNEYPEEWAKLASRWDPTGDF 475
TP+ L R++P+A TKC E + T I R+ K E ++ + SR+D
Sbjct: 333 TPKILVLTRLIPDAKGTKCNVELEPVENTKYSHILRVPFKTEDGKDLRQWVSRFDIYPYL 392
Query: 476 TRYFEDYLAK 505
RY ++ AK
Sbjct: 393 ERYAQNSCAK 402
>02_03_0052 -
14456925-14457176,14457277-14457437,14457843-14457914,
14458105-14458221,14458310-14458322,14458917-14458946,
14459837-14460010,14460276-14460417,14460731-14460792,
14461047-14461643
Length = 539
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/91 (23%), Positives = 38/91 (41%)
Frame = +2
Query: 221 YLDVDDIFRNKRLVRNYVDCLINAQRCTPEGKALKRILPEALRTKCIRCTERQKRTSVKV 400
++ DIFR R + ++V C+++ Q ++ + TK ++ T+ +
Sbjct: 344 FIVAPDIFRINRDILSFVSCIVSNQIKQTCASIIQDTSDTSSNTKTDLSSDTPSNTT--M 401
Query: 401 IRRLKNEYPEEWAKLASRWDPTGDFTRYFED 493
K + E A DPT D +Y ED
Sbjct: 402 TGSTKRAF-NELCFCAKNVDPTADLKKYIED 431
>10_08_0950 + 21764902-21765912
Length = 336
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = +2
Query: 311 GKALKRILPEALRTKCIRCTERQKRTSVKVIRRLKNEYPEEWAKLASRWDPTGD 472
G L+ +P+A R+K + +R++ T++KV + ++ E A++AS GD
Sbjct: 212 GSGLRFTIPKASRSKPV--AQREQPTAIKVEKSEEDAEAEAMAEVASALRAVGD 263
>07_01_0172 -
1201595-1201912,1202637-1202723,1202836-1202895,
1203007-1203106,1203227-1203633,1204728-1204883,
1204981-1205106,1205503-1205572,1205679-1205767
Length = 470
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 254 RLVRNYV-DCLINAQRCTPEGKALKRILPEALRTKCIRCTERQKRTSVKVI 403
+LV +Y D ++ +R A++R LPE+LR RC RQ R + KV+
Sbjct: 402 KLVESYARDARLSPERLVD---AVQRCLPESLRAAVQRC--RQSRPASKVV 447
>08_02_0138 - 13052183-13052784,13053019-13053337
Length = 306
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 148 LCVCCGGTGHQRND 189
+C CG TGH RND
Sbjct: 23 MCELCGNTGHSRND 36
>02_05_1169 +
34656450-34656603,34657321-34657481,34657907-34657958,
34658289-34658425,34658775-34658861,34658939-34659226
Length = 292
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 480 DTSKITSLKNISTPFPDLVQQ*TCFPCKQHPRPLHRRLRDQP 605
D ++ S KN+ + ++ T P K+HPRP + R P
Sbjct: 235 DVEELKSAKNLLSVVESWLRSETKLPKKEHPRPETQPRRSSP 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,910,145
Number of Sequences: 37544
Number of extensions: 410697
Number of successful extensions: 1214
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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