Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4036
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    25   0.56 
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    25   0.56 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   3.9  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.2  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.2  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.2  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.2  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.2  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.2  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   5.2  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   5.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.2  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   5.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.0  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   9.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.0  

>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 115 FLRRAEHCMGKVAEAPESPVSKCVSSMSPIVV 20
           +LRR   C   + EAP  PV + + S++P+V+
Sbjct: 47  YLRRQLKCA--LGEAPCDPVGRRLKSLAPLVL 76


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 115 FLRRAEHCMGKVAEAPESPVSKCVSSMSPIVV 20
           +LRR   C   + EAP  PV + + S++P+V+
Sbjct: 47  YLRRQLKCA--LGEAPCDPVGRRLKSLAPLVL 76


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 34  TSKTHTSRPETPGPQ 78
           T   H   PETPGPQ
Sbjct: 462 TPHHHPHPPETPGPQ 476


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 216 DIFNGKKYEDIC 251
           D+ N +KYED+C
Sbjct: 597 DLSNERKYEDVC 608


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 181 FPVLDVDISTILHGR 137
           FPVL V I+ +LHG+
Sbjct: 8   FPVLFVIINVLLHGQ 22


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -3

Query: 433 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 335
           N L +   +R  N     PSG +RS+  +P+S  R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -3

Query: 433 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 335
           N L +   +R  N     PSG +RS+  +P+S  R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -3

Query: 433 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 335
           N L +   +R  N     PSG +RS+  +P+S  R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -3

Query: 433 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 335
           N L +   +R  N     PSG +RS+  +P+S  R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -3

Query: 433 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 335
           N L +   +R  N     PSG +RS+  +P+S  R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -3

Query: 433 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 335
           N L +   +R  N     PSG +RS+  +P+S  R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +1

Query: 160 CPHPKPESTATLKFTWLGLISSMVKSM 240
           CP   P        TWLG ++S +  +
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNSALNPL 379


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +1

Query: 160 CPHPKPESTATLKFTWLGLISSMVKSM 240
           CP   P        TWLG ++S +  +
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNSALNPL 379


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -3

Query: 433 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 335
           N L +   +R  N     PSG +RS+  +P+S  R
Sbjct: 412 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 446


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -3

Query: 433 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 335
           N L +   +R  N     PSG +RS+  +P+S  R
Sbjct: 412 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 446


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +1

Query: 160 CPHPKPESTATLKFTWLGLISSMVKSM 240
           CP   P        TWLG ++S +  +
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNSALNPL 379


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -2

Query: 488 CFDGDDALLTAGFQHGAQQFLAA 420
           C D DD LL      G++   AA
Sbjct: 670 CLDDDDTLLEVALSLGSEALSAA 692


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 237 YEDICPSTHNMDV 275
           YE   PSTH MD+
Sbjct: 46  YERFSPSTHLMDL 58


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 216 DIFNGKKYEDICPSTH 263
           +I NGKK  +I   TH
Sbjct: 44  EIINGKKLTEIINETH 59


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 397 VPRSPSGILRSSRRSPLS 344
           VP+S +G+  SSRRS ++
Sbjct: 239 VPKSVAGLNVSSRRSDMN 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,420
Number of Sequences: 438
Number of extensions: 4067
Number of successful extensions: 21
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)