Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4034
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.12 |did2||vacuolar sorting protein Did2|Schizosaccharom...    57   3e-09
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    27   2.2  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    27   3.9  
SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch...    27   3.9  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    27   3.9  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    26   5.1  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   6.7  
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    25   8.9  

>SPBC13G1.12 |did2||vacuolar sorting protein
           Did2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 178

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 26/39 (66%), Positives = 34/39 (87%)
 Frame = +1

Query: 67  ARVDAVSSRVQTALTTRKVTNSMAGVVKAMDAAMKSMNL 183
           +R+DAVSSR+QTA+T R V+ +MAGVV+ MD AMK+MNL
Sbjct: 48  SRIDAVSSRLQTAVTMRAVSGNMAGVVRGMDRAMKTMNL 86



 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 19/38 (50%), Positives = 26/38 (68%)
 Frame = +2

Query: 185 QKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVPQ 298
           + IS +MDKFE+QF+D++VQ+ YM  AM   T    PQ
Sbjct: 87  EMISQVMDKFEAQFDDVNVQTGYMNKAMGSVTAVDTPQ 124



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = +3

Query: 294 PKGDVDNLLQQVADEAGLELNMELPS--GVPSTSIGTATVVSQEQDELTQRLARLR 455
           P+ DVD L+Q VADEAGLE N  + +   VP+ S+ T      E D L +RL  LR
Sbjct: 123 PQEDVDLLMQTVADEAGLEFNQNMNNNLSVPAASVPT-PAAPVEDDNLQERLRALR 177


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 191  ISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVPQGR 304
            +STL DK+ +   DLD  S Y E      T T +P  R
Sbjct: 1295 VSTLGDKYWNLKIDLDNNSDYRELLRESQTLTLMPYDR 1332


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 541 QHPYL*GLNIYMYYNSSDPIKLIHIYS 461
           Q P L G +++ YY S D I   H+++
Sbjct: 804 QIPCLMGYSLFQYYRSGDSISFKHLFT 830


>SPBC19G7.13 |trf1||telomeric DNA binding factor
           Trf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 19  PRWRPLLKLVGPPGCRARVDAVSSRVQ 99
           PRW  +L+L GP G ++ V    ++VQ
Sbjct: 426 PRWSQILELYGPGGKKSEVLKYRNQVQ 452


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 160 AAMKSMNLAENFYTNGQV 213
           +A K++ LAEN YTNG V
Sbjct: 311 SAKKTLELAENLYTNGFV 328


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -3

Query: 508 MYYNSSDPIKLIHIYSACLNLASLCVSSSCSWETTVAVPIDVLGTPD 368
           +Y  S D ++   I  AC  L    V S C W+ +  + + +   PD
Sbjct: 279 LYRFSDDTVRFEMIQDACRILIDNQVGSFCKWQFSQFMELPISLNPD 325


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 286  YSSPRETLIIYFNRLQMKLGWS*IWN 363
            YS  +   I Y+N  ++++ WS IWN
Sbjct: 1192 YSLQKLVEISYYNMQRIRVEWSSIWN 1217


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 467 LFCLSQPGKSLCEFVL 420
           +FC S P KS+ EFVL
Sbjct: 355 VFCASSPDKSVVEFVL 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,168
Number of Sequences: 5004
Number of extensions: 63807
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)