Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4034
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106583-3|AAD03134.1|  205|Caenorhabditis elegans Hypothetical ...    60   2e-09
AL110485-7|CAB60355.1|  237|Caenorhabditis elegans Hypothetical ...    33   0.17 
Z68338-2|CAA92759.1|  411|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U70858-5|AAB09179.2|  294|Caenorhabditis elegans Serpentine rece...    29   2.7  
AL032657-11|CAA21737.3|  372|Caenorhabditis elegans Hypothetical...    29   3.6  
AF067937-3|AAF99913.2|  559|Caenorhabditis elegans Hypothetical ...    28   6.3  

>AF106583-3|AAD03134.1|  205|Caenorhabditis elegans Hypothetical
           protein F23C8.6 protein.
          Length = 205

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 28/39 (71%), Positives = 36/39 (92%)
 Frame = +1

Query: 67  ARVDAVSSRVQTALTTRKVTNSMAGVVKAMDAAMKSMNL 183
           AR+DAV++RVQTA T ++VT SM+GVVKAM++AMKSMNL
Sbjct: 76  ARIDAVAARVQTAATQKRVTASMSGVVKAMESAMKSMNL 114



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 30/57 (52%), Positives = 38/57 (66%)
 Frame = +3

Query: 285 LQFPKGDVDNLLQQVADEAGLELNMELPSGVPSTSIGTATVVSQEQDELTQRLARLR 455
           L  PK  VD L+ + AD+AG+ELN ELPS VP T++ T T    E  +LT+RLA LR
Sbjct: 148 LNAPKSQVDALIAEAADKAGIELNQELPSNVP-TALPTGTQAVSEDKDLTERLAALR 203



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = +2

Query: 185 QKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVPQGR 304
           +K+  LMD+FE  FEDLDV +  ME  M  TT    P+ +
Sbjct: 115 EKVQQLMDRFERDFEDLDVTTKTMEKTMDGTTVLNAPKSQ 154


>AL110485-7|CAB60355.1|  237|Caenorhabditis elegans Hypothetical
           protein Y46G5A.12 protein.
          Length = 237

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +1

Query: 64  RARVDAVSSRVQTALTTRKVTNSMAGVVKAMDAAMKSMNLAE 189
           +A + AVS +VQT  +   + ++M GV KAM +  + +NL +
Sbjct: 80  KANIQAVSLKVQTLKSQDAMASAMKGVTKAMQSMNRQLNLPQ 121


>Z68338-2|CAA92759.1|  411|Caenorhabditis elegans Hypothetical
           protein T24B8.2 protein.
          Length = 411

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 291 FPKGDVDNLLQQVADEAGLELNMELPSGVPSTSIGTATV-VSQEQDELTQRLARLRQA 461
           F   D++  L+ +  +     ++ LP   P+   G     V+ E+D+L +RLARLRQA
Sbjct: 354 FNDADLEQELEDLISDNKKNESVHLPEA-PTNRFGLFDKEVTPEEDQLEKRLARLRQA 410


>U70858-5|AAB09179.2|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein34 protein.
          Length = 294

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -1

Query: 567 RTFVYNLITNTHTFKV*TFTCITIALIQLN*FTFIL 460
           + F YN + N  T +V  F+ IT++L+ +N + FI+
Sbjct: 107 KPFSYNTVFNPRTTRVIIFSVITLSLLIVNCWLFII 142


>AL032657-11|CAA21737.3|  372|Caenorhabditis elegans Hypothetical
           protein Y47H9C.11 protein.
          Length = 372

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 197 TLMDKFESQFEDLDVQSSYMENAMSQTTTTT 289
           +L  KF    ED D  +SY+ENAM Q  T T
Sbjct: 163 SLQQKFRKSDEDED-SNSYLENAMDQLETIT 192


>AF067937-3|AAF99913.2|  559|Caenorhabditis elegans Hypothetical
           protein F22F7.3 protein.
          Length = 559

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 273 KLRQLQFPKGDVDNLLQQVADEAGLELNMELPSGVPSTSIGTATVVSQEQD 425
           K+R    P    DN+ Q ++D+  LE++ME+ S + S  I   +    + D
Sbjct: 408 KVRDGAVPVNPGDNITQLISDQHLLEIDMEMKSILTSEPIAALSATLPKTD 458


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,389,959
Number of Sequences: 27780
Number of extensions: 373882
Number of successful extensions: 1248
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)