Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4033
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0364 - 2790450-2790464,2790601-2791116                           34   0.074
11_01_0593 - 4705565-4705822,4705916-4706065,4706160-4706307,470...    29   2.8  
01_01_0406 + 3059996-3060047,3060804-3060867,3060979-3061054,306...    29   2.8  
10_08_1049 - 22555738-22555744,22556157-22556286,22556613-225567...    27   8.5  
05_01_0458 + 3630218-3630274,3630383-3630507,3630635-3630710,363...    27   8.5  

>11_01_0364 - 2790450-2790464,2790601-2791116
          Length = 176

 Score = 33.9 bits (74), Expect = 0.074
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 332 LVRYHNPIFSTAKYT*PPVWCSGKSHG 252
           + RYH P F T ++  PP WC G   G
Sbjct: 124 MARYHAPGFGTTQWLAPPAWCGGGGGG 150


>11_01_0593 -
           4705565-4705822,4705916-4706065,4706160-4706307,
           4706400-4706479,4706573-4706739,4706830-4707078,
           4707161-4707733,4707833-4707972,4708064-4708185,
           4708622-4708743,4708877-4709105
          Length = 745

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +3

Query: 168 HNPGKDIYIYHTNIFPWRDSNPRPPCVVTM*LTTTPDGRLCIFSCRKDRIVVPNQMNA 341
           H+  K   +      P R S+  P C      TTTPDG        +DR+ VP++ N+
Sbjct: 290 HDRSKMSVVQWAMRLPSRYSSASPVCSEYR--TTTPDGITSASRILRDRVAVPSRSNS 345


>01_01_0406 +
           3059996-3060047,3060804-3060867,3060979-3061054,
           3061142-3061243,3061327-3061542,3061615-3061695,
           3062219-3062287,3062789-3062961,3063098-3063182,
           3063290-3063491,3063577-3063646,3063956-3064025,
           3064138-3064227,3064321-3064389,3064566-3064664,
           3064814-3064924
          Length = 542

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 274 QTGGYVYLAVEKIGLWYRTK*TRNIIAKQWITYLFCMG 387
           Q GG+ Y + +   LWYR     N+   +WI Y+  +G
Sbjct: 263 QDGGFNYASTDLAALWYRL----NVEKAEWIIYVTDVG 296


>10_08_1049 -
           22555738-22555744,22556157-22556286,22556613-22556790,
           22556990-22557099,22557234-22557349,22557707-22557968,
           22558097-22558406,22558450-22558500,22558545-22558628
          Length = 415

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 411 YSTNQRLPSHTKKVRNPLLRNNISRSFGSVPQSYL 307
           Y    RLPS  KKV +P++   +S    +V   YL
Sbjct: 231 YILGSRLPSGVKKVLHPIICCALSADLAAVAYGYL 265


>05_01_0458 +
           3630218-3630274,3630383-3630507,3630635-3630710,
           3630884-3630985,3631075-3631290,3632217-3632297,
           3633152-3633235,3633405-3633509,3634338-3634516,
           3634681-3634765,3634889-3635090,3635165-3635234,
           3635353-3635422,3635745-3635834,3636020-3636088,
           3636520-3636618,3636804-3636914
          Length = 606

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 280 GGYVYLAVEKIGLWYRTK*TRNIIAKQWITYLFCMG 387
           GG+ Y + +   LWYR     N+   +WI Y+  +G
Sbjct: 329 GGFNYASTDLAALWYRL----NVEKAEWIIYVTDVG 360


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,570,066
Number of Sequences: 37544
Number of extensions: 293957
Number of successful extensions: 556
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)