Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4032
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    33   0.046
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    25   9.3  
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    25   9.3  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 32.7 bits (71), Expect = 0.046
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = +2

Query: 191 SFVNHYANVNDTLRQSWKK--QRPVRNYSSYTDSEPE--GSAVVSLNGGQIVMNNM 346
           SFVN ++ +ND+L Q +KK  +  ++   S T S P    S   S+N G  +  N+
Sbjct: 446 SFVNKFSELNDSLDQFFKKKYEEEIKETKSPTRSSPRDLSSFSTSVNDGSFLFKNL 501


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 550 VLTVYRLLNINLGILLCRCVNM 485
           ++T Y+L  I LGI +  C+NM
Sbjct: 115 IVTTYQLF-ITLGIFIAACINM 135


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 550 VLTVYRLLNINLGILLCRCVNM 485
           ++T Y+L  I LGI +  C+NM
Sbjct: 147 IVTTYQLF-ITLGIFIAACINM 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,975,861
Number of Sequences: 5004
Number of extensions: 36248
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)