Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4032
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0132 + 18303925-18307164                                         30   1.4  
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134...    29   3.1  
04_04_0024 - 22216105-22217856                                         29   3.1  
04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527...    29   4.1  
01_05_0774 + 25066827-25067357,25067502-25067755,25067896-250681...    29   4.1  
03_05_0199 - 21893051-21893509,21893835-21894482,21894566-218948...    28   7.2  
01_06_0868 - 32587618-32587875,32588239-32588318,32588518-325885...    28   7.2  
03_01_0646 + 4742398-4742994,4743681-4744085                           27   9.6  

>05_04_0132 + 18303925-18307164
          Length = 1079

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/88 (25%), Positives = 37/88 (42%)
 Frame = -2

Query: 526 NINLGILLCRCVNMAYSLGLKRVKADEAHM*TVRAGAAAMGDSSCHTNEEKPGSGARDRA 347
           N+ LG+ LC   + +   G+ +  + E +      GA  + D +  T E+   S   D A
Sbjct: 638 NMELGVFLCDLQDASEGSGIAQESSQEGNSACFNDGAQMVPDITTQTTED--ASEESDTA 695

Query: 346 HVVHHDLTSVEADHGATLGLGVRVAGVI 263
                D  S     GA + LG+  + +I
Sbjct: 696 QETTLDDNSTPLAAGAQMELGIGTSELI 723


>07_03_1389 +
           26212117-26212119,26212721-26212875,26213402-26213479,
           26214211-26214375,26214453-26214554,26214661-26214786,
           26215454-26215490
          Length = 221

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 225 RYDSLGRNSDPYVITPATRTPSPRVAPWSASTEVRS**TTWARSRAPL-PGFSSFV*QEE 401
           RY    R   PY     +R+PSPR A         S   + +RSR+P+  G+     + E
Sbjct: 150 RYSPPPRGRSPYRSPSYSRSPSPRYARRRMRERSYSPVESRSRSRSPVEEGYGGGSTRRE 209

Query: 402 SPIAAAP 422
              AAAP
Sbjct: 210 RTAAAAP 216


>04_04_0024 - 22216105-22217856
          Length = 583

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +3

Query: 228 YDSLGRNSDPYVITPATRTPSPRVAPWSASTEVRS**TTWARSRAP-LPGFSSFV*QEES 404
           Y + G  S    + P++  PSP  A  SA   +     + A  R   LPGF      + S
Sbjct: 55  YSAAGPPSQQQQLPPSSSPPSPSHA--SAELWIAKALASAALLRPRHLPGFRRI---DPS 109

Query: 405 PIAAAPARTVHM*ASSALTLFS 470
           P+AAA A  +   ASSAL +F+
Sbjct: 110 PLAAAAALRLAPCASSALAVFT 131


>04_03_0747 -
           19251617-19251781,19252377-19252502,19252606-19252716,
           19252931-19253679,19254034-19254167,19254595-19254740,
           19255166-19255336,19255977-19256828
          Length = 817

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 21/59 (35%), Positives = 23/59 (38%)
 Frame = +3

Query: 249 SDPYVITPATRTPSPRVAPWSASTEVRS**TTWARSRAPLPGFSSFV*QEESPIAAAPA 425
           S P    P  RTP P   P    T  R     WA   APLP  +        P AAAP+
Sbjct: 127 SPPPPPPPPARTPMPTPTPTPTPTPTRPPVPVWA---APLPARTPTPTPSAPPRAAAPS 182


>01_05_0774 +
           25066827-25067357,25067502-25067755,25067896-25068100,
           25068391-25068816
          Length = 471

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -2

Query: 295 LGLGVRVAGVITYGSLFLPRLS*RIVNVGVMIHERMWFRPHAFVFTFRILRVRGAHLR 122
           LG G+R    + + SL    L   ++  G  +  R+W+RP       R   +RG   R
Sbjct: 3   LGAGLRCPASVPWSSLAYGLLGLVLLWQGGRLLHRLWWRPRRLELALRAQGLRGTRYR 60


>03_05_0199 -
           21893051-21893509,21893835-21894482,21894566-21894888,
           21895978-21896116
          Length = 522

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -2

Query: 349 AHVVHHDLTSVEADHG--ATLGLGVRVAGVITYGSLFLPRLS*RIVNVG 209
           A++V++    +    G   +LGL    A VI  GSLFLP     ++N G
Sbjct: 187 ANLVNYGAAKIRGGWGWRVSLGLAAAPACVIAVGSLFLPDSPSSLINRG 235


>01_06_0868 -
           32587618-32587875,32588239-32588318,32588518-32588583,
           32589896-32590523
          Length = 343

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 255 PYVITPATRTPSPRVA-PWSASTEVRS**TTWARSRAPLPGFSS 383
           P+ +TP++ + SPR A PW   T  R    TW RS   L GF S
Sbjct: 78  PFSLTPSSASASPRRAQPW-GRTWARPPGPTWPRS--DLGGFPS 118


>03_01_0646 + 4742398-4742994,4743681-4744085
          Length = 333

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1

Query: 343 HGRGRVPRCLASLRLYDRRSRP*RPHLLERFTCEPHP 453
           +GR R P   ASL L  R S     H L+  +  PHP
Sbjct: 60  YGRRRRPNATASLELRHRTSPAAVAHFLDNPSRPPHP 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,263,801
Number of Sequences: 37544
Number of extensions: 272674
Number of successful extensions: 750
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)