Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4032
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.62 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   1.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 325 SDRDEQHGRGRVPRCLASLRLYDRRS 402
           SD  E H    VP+ +A L +  RRS
Sbjct: 228 SDGPESHQNSNVPKSVAGLNVSSRRS 253


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/52 (23%), Positives = 22/52 (42%)
 Frame = +2

Query: 221 DTLRQSWKKQRPVRNYSSYTDSEPEGSAVVSLNGGQIVMNNMGAVACPAAWL 376
           D +  +W K   V      +  + +G  +  LNG    M+++  +   A WL
Sbjct: 20  DCVDANWYKNALVYQIYPRSFQDSDGDGIGDLNGITARMDHIADIGADALWL 71


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 502 IIECLNLYLVIYTQLKQVITL 564
           IIE L+ ++VI+T +  +ITL
Sbjct: 407 IIEWLSFFIVIFTYIIILITL 427


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,122
Number of Sequences: 438
Number of extensions: 2838
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)