Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4026
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1399.04c |||uracil phosphoribosyltransferase |Schizosaccharo...    28   1.1  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    28   1.5  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    27   1.9  
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    26   5.9  
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    25   7.8  

>SPAC1399.04c |||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 220

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 24/86 (27%), Positives = 39/86 (45%)
 Frame = +2

Query: 425 GSAAAKQALVSVGDVLLEVDGVHIESEEQLKEAVAKPNDRVTLKVGPNLKEKSSQLTNKL 604
           G AAA    V VG +L++ D    E++    +      DR+ L + P L   +S +    
Sbjct: 95  GLAAACNYSVPVGKLLVQRDETTFEAKLMFCKLPKDAQDRLVLLLDPLLATGNSVILAIQ 154

Query: 605 TCYVRTLFDYNPIQDTLIPCKEIGLT 682
           T   + + + N +   LI C E G+T
Sbjct: 155 TLINKGIPEENIVFVNLIACNE-GIT 179


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 25/97 (25%), Positives = 39/97 (40%)
 Frame = +2

Query: 380 QPMSMDSLLLQGYFAGSAAAKQALVSVGDVLLEVDGVHIESEEQLKEAVAKPNDRVTLKV 559
           Q MS D   +Q          +    +   L  V+G+  E  + L  A+   +  ++L  
Sbjct: 146 QTMSSDMSEVQSMEISLNCDHEFFEKLTSELQSVEGLQREQRKILFNAIDILSHEISLIA 205

Query: 560 GPNLKEKSSQLTNKLTCYVRTLFDYNPIQDTLIPCKE 670
            PN K+K       L C+ R +F+     D  I CKE
Sbjct: 206 SPNSKKK----YKSLYCW-RKIFEIYMDSDIFISCKE 237


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 20/47 (42%), Positives = 25/47 (53%)
 Frame = -2

Query: 335 TTFTVSIGISPLPSGLSFENSIRSGNSFGINLSSIPDPLSNQILPIW 195
           TT   SI   P PSGLS  NS  + +SF      IP  +  Q+LPI+
Sbjct: 337 TTSIPSINNQPFPSGLSASNSNFASSSF------IPQSVP-QLLPIY 376


>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -1

Query: 363 RLSWYF-SKTYNFYCFYRHIAVTLGTL 286
           R  WY  S + NF+ FY H+   +G +
Sbjct: 255 RFLWYSTSYSLNFHLFYHHLTTMMGQM 281


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +1

Query: 175 ALIEAHDQ--IGKIWLERGSGIDDKLIPNEFPDLIEFSKESPE 297
           AL E H+   IGKI  +  S + DK     FP LI F  +  E
Sbjct: 66  ALFEDHNDVLIGKIDADTHSDVADKYHITGFPTLIWFPPDGSE 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,368
Number of Sequences: 5004
Number of extensions: 54873
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)