Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4026
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0168 - 15379897-15380819,15381306-15381894 30 2.0
04_03_0144 + 11796550-11797178,11797808-11797902,11798053-117981... 29 2.6
09_03_0092 + 12306991-12307323,12308302-12308339,12308465-123092... 29 4.6
06_03_0468 - 21083754-21083869,21083986-21084069,21085633-210859... 29 4.6
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 29 4.6
11_05_0077 - 18866707-18867334,18867410-18867555 28 6.1
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76... 28 8.0
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 28 8.0
>10_08_0168 - 15379897-15380819,15381306-15381894
Length = 503
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 401 LLLQGYFAGSAAAKQALVSVGDVLLEVDGV-HIESEEQLKEAVAKPNDRVTLKVGP 565
L+++ + AG A + V G+V ++GV H E E L+E V K + V P
Sbjct: 422 LVVREWRAGVAVGDRGAVDAGEVRARIEGVMHGEEGEVLREQVGKMRATLHAAVAP 477
>04_03_0144 +
11796550-11797178,11797808-11797902,11798053-11798102,
11798382-11799293
Length = 561
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +2
Query: 386 MSMDSLLL---QGYFAGSAAAKQALVSVGDVLLEVDGVHIESEEQLKEAV 526
M +DS +L +FA A +A V G +EVDGV E+ E KE V
Sbjct: 152 MELDSAVLCESSAFFAAMAPPPEATVGGGSKRIEVDGV--ENVEAFKETV 199
>09_03_0092 +
12306991-12307323,12308302-12308339,12308465-12309244,
12309386-12309875
Length = 546
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = -2
Query: 224 PLSNQILPIWS*ASINALKCALDTMIASSACSIVRILFXTVLT*RPD 84
P+ +I+P S SI AL + ++++AS A IV IL V RPD
Sbjct: 385 PIFAEIVPEKSRTSIYALDRSFESVLASFAPPIVGILAQRVYGYRPD 431
>06_03_0468 -
21083754-21083869,21083986-21084069,21085633-21085920,
21087525-21087687
Length = 216
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 395 PCSSVVTVKPKGCPGTFLRPTTFTVSIGISPL 300
P S V V+PK CPG R + F ++PL
Sbjct: 68 PTSGVFEVEPKCCPGFMYRCSIFIGRTSLNPL 99
>02_05_0359 -
28269236-28269541,28270857-28270919,28271439-28271459,
28271660-28271716,28271789-28271874,28271982-28272039,
28272176-28272311,28272799-28273073,28273564-28273602,
28274052-28274143,28274422-28274454,28275041-28275088,
28275191-28275323
Length = 448
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +1
Query: 196 QIGKIWLERGSGIDDKLIPNEFPDLIEFSKESPEGNGDM 312
++ +IW+ERG G KL+ ++ L +S+ + D+
Sbjct: 355 KLSQIWIERGLGFPSKLVMDDSMPLHAWSRSAVASESDL 393
>11_05_0077 - 18866707-18867334,18867410-18867555
Length = 257
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = -2
Query: 488 PRLLPVEHHQQILRPVLLLHFLQSILATISCPCSSVVTVKPKGCPGTFLRPTTFTVSIGI 309
PRLLP LRP+L L S+L +S +S K + P LR + T+ I
Sbjct: 80 PRLLPPHRPPVPLRPLLRLPRTSSLLLLLSASSASAAK-KQQQRPFELLRTASGTLQIKF 138
Query: 308 S 306
S
Sbjct: 139 S 139
>09_01_0042 +
764349-764763,764853-764902,765096-765172,766179-766236,
767481-767607,768665-768769,768842-769424,769470-769775,
770048-770139,770391-770440
Length = 620
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -2
Query: 401 SCPCSSVVTVKPKGCPGTFLRPTTFTVSIGISPLPSGLSFENSIRSGN-SFGI-NLSSIP 228
S P ++ V G P FL TT + I +P G I G G+ +++ +
Sbjct: 349 SIPTGEMMPVS--GSPFNFLTETT--IGSRIDQVPGGYDHNFVIDCGEVKSGLCHVAKVT 404
Query: 227 DPLSNQILPIWS 192
DP S+++L IW+
Sbjct: 405 DPSSSRVLDIWA 416
>07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = -2
Query: 533 VLLQLPSVAPLIQCEPRLLPVEHHQQILRPVLLLHFLQSILATISCPCS 387
++ + +V PLI P+ + +E Q + + ++ FL + A I C C+
Sbjct: 1063 IIFVIDAVLPLIWKPPQSVVIELEQDLKQMIVRHSFLTVVHACIKCLCA 1111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,915,001
Number of Sequences: 37544
Number of extensions: 348283
Number of successful extensions: 904
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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