Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4023
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73899-8|CAA98079.2|  669|Caenorhabditis elegans Hypothetical pr...    31   0.90 
AL117207-6|CAB60396.2|  372|Caenorhabditis elegans Hypothetical ...    28   4.8  
AF016684-17|AAB66201.1|  463|Caenorhabditis elegans Hypothetical...    27   8.4  

>Z73899-8|CAA98079.2|  669|Caenorhabditis elegans Hypothetical
           protein ZK829.10 protein.
          Length = 669

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 175 ARRFAVRTARIFASANVPWPGC*IWWDNKTANILNQ 282
           A +F +  AR + S ++PW  C  WW+ +T +I+ Q
Sbjct: 118 AFKFLLSLAR-YRSQDMPWSTCGNWWNTETGHIVFQ 152


>AL117207-6|CAB60396.2|  372|Caenorhabditis elegans Hypothetical
           protein Y60A3A.8 protein.
          Length = 372

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 21/67 (31%), Positives = 34/67 (50%)
 Frame = -3

Query: 550 AACKLIYTKNINSCLRILHHSDQFLLFQTPNYTCI*EYLECICFKSHLLLV*SRFNDSIL 371
           A  +L+  KN   CLR    SDQFL+  TPN+        C   +++ +   S   D++ 
Sbjct: 18  AVVELLPYKN-RCCLRKCSKSDQFLVDSTPNHLHDVAIHTC---ENYTVFTYSDSPDTVF 73

Query: 370 SLQF*KN 350
           +L++ KN
Sbjct: 74  TLKYFKN 80


>AF016684-17|AAB66201.1|  463|Caenorhabditis elegans Hypothetical
           protein F45C12.1 protein.
          Length = 463

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -3

Query: 604 NVQISLKFLLKTREKPERAACKLI-YTKNINSCLRILHHSDQFLLFQTPNYTCI*EYLEC 428
           N QI   F +   +KP +  C    YTKN    ++I+++S    L    N+  I +Y+EC
Sbjct: 95  NSQIK-SFSIFQEKKPIKMFCDFRRYTKNSVDGVKIVNNSQLTDLESLKNFELIQDYVEC 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,776,507
Number of Sequences: 27780
Number of extensions: 279399
Number of successful extensions: 703
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)