Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4022
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...    26   3.8  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    25   6.7  
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...    25   6.7  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    25   6.7  
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    25   8.9  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     25   8.9  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 408 SHGGRFSDAPSPGERHAQRRHISR 479
           S G + +  P+P  +H QR+H +R
Sbjct: 123 SKGKKATSTPNPKSKHVQRKHSAR 146


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 138 YLNSRVCFHPFICDNH 185
           YL++R+CFH  + D+H
Sbjct: 948 YLSTRICFHRGLDDSH 963


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 408 SHGGRFSDAPSPGERHAQRRHISR 479
           S G + +  P+P  +H QR+H +R
Sbjct: 123 SKGKKATATPTPKSKHVQRKHSAR 146


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +2

Query: 482 LVRLTVLTGHHYVYYRID---ARC*VYXDGSRRCSPAGCDVNSRN 607
           LV +      ++ YYR++   + C ++ + +  CS  GC V S N
Sbjct: 45  LVPVLTERSDYFSYYRVNLYRSSCPLWENDNAMCSNQGCAVKSLN 89


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 361 VHCSWMLFKQSSE*GLVTADAFQMRHRRVSVTPSDDT*AGSCTPDGTHWTSL 516
           V  S +L   S    L+T+ + + +  +V+ T       G CTPDG+ W ++
Sbjct: 195 VAASLLLPALSGSCALLTSYSAKSKSLQVACTGDSRAVLGECTPDGS-WEAI 245


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -3

Query: 584 LPANIAGYHXNIPNNVHQSYNIRSDVQ*VPSGVQEPAYVSSLGVTLTRRWRI*KASAVT- 408
           +P +    +  +  NV+QSY+   D   +PS    P  V++     T+  ++ K SAV+ 
Sbjct: 145 IPTSATDNYTTVNGNVNQSYSKGIDGTALPSTHANP--VAAPSTATTQHTQLPKTSAVSH 202

Query: 407 -SPH 399
             PH
Sbjct: 203 QKPH 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,357,323
Number of Sequences: 5004
Number of extensions: 47662
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)