Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4022
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0258 + 21339682-21339806,21340635-21340730,21340905-213409...    29   3.0  
03_05_0515 - 25102978-25103115,25103678-25104211,25104236-251048...    28   5.2  
04_04_0008 + 22125707-22125828,22127122-22127197,22127297-221273...    27   9.2  

>02_04_0258 +
           21339682-21339806,21340635-21340730,21340905-21340980,
           21341085-21341143,21341280-21341380,21341447-21341773,
           21341861-21342021,21342100-21342303,21342735-21342966,
           21343629-21344239
          Length = 663

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +2

Query: 497 VLTGHHYVYYRIDAR 541
           VL+G HYVYY ID+R
Sbjct: 337 VLSGKHYVYYAIDSR 351


>03_05_0515 -
           25102978-25103115,25103678-25104211,25104236-25104880,
           25106601-25106711
          Length = 475

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -3

Query: 344 CVELKKNYFLNIKVIYIMCMREPRYYI 264
           C+   + YF+N K+ Y++ +   RY++
Sbjct: 232 CIAAAEGYFMNFKMAYVVALLVLRYFV 258


>04_04_0008 +
           22125707-22125828,22127122-22127197,22127297-22127367,
           22127502-22127995,22128079-22128239,22128329-22128532,
           22129292-22129526,22129996-22130591
          Length = 652

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 497 VLTGHHYVYYRIDAR 541
           VL+G HY+YY  DAR
Sbjct: 330 VLSGKHYIYYSSDAR 344


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,689,235
Number of Sequences: 37544
Number of extensions: 287397
Number of successful extensions: 536
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)