Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4021
(683 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz... 52 6e-08
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac... 34 0.022
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz... 32 0.089
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 31 0.12
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 27 3.3
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 5.8
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 26 5.8
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 5.8
>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 52.4 bits (120), Expect = 6e-08
Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 8/178 (4%)
Frame = +1
Query: 172 CLKEELHANVLVAGEYDVTEIQG--QRVDYIIKDSKGHILSQKDTVTKGK-FSFVTENYD 342
CL+E + LV T G Q + +I DS G+ S V K +F +
Sbjct: 36 CLREYVGEKNLVIVNLKTTGNMGDGQTLSMMITDSSGNTHSSIQNVLGEKSVAFDVDASA 95
Query: 343 MFEVCFISKVPSERRGIPHQ---VSLDIKIGIEAKTYEGIGEAAKLKPMEVELKRLARPI 513
M ++CF++ + H+ V L+ +G +A Y + +A L+P+E +++R I
Sbjct: 96 MLDICFLNTLTPGAIESEHKKRSVKLEFTVGADADDYSSLQKANNLEPVEADIRRARDFI 155
Query: 514 RSYRSRFHTNE--EKRRRNERYQ*INE**SFILPYILDGVPLGVWATWQVLYLRRFFK 681
+ + + + E R RN +F L + L V WQ+LYLR FF+
Sbjct: 156 EEIKGKIYYLQAREARFRNTNESTNERVKNFAY---LTFISLFVLVIWQILYLRSFFQ 210
Score = 29.9 bits (64), Expect = 0.36
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 503 QDLSEAIVQDFTLMRKREEEMRDTNESTNNRVLFFRIFSMACL 631
+D E I ++ RE R+TNESTN RV F + L
Sbjct: 152 RDFIEEIKGKIYYLQAREARFRNTNESTNERVKNFAYLTFISL 194
>SPBC16E9.09c |||COPII vesicle coat component
Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 33.9 bits (74), Expect = 0.022
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +2
Query: 515 EAIVQDFTLMRKREEEMRDTNESTNNRVLFFRIFSMACLL 634
E+I+ + L R RE RDT+ES N+RV+ + I + LL
Sbjct: 156 ESILGEQMLQRSREMTFRDTSESANSRVVRWTIVQIVVLL 195
>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 31.9 bits (69), Expect = 0.089
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +1
Query: 148 SLAPNTHKCLKEELHANVLVAGEYDVTEIQGQRVDYIIKDSKGHILSQKDTVTKGKFSFV 327
+L P+ +C E L N ++ Y Q V I + G I+ Q+ + ++SF
Sbjct: 25 TLKPHQRECFYENLRNNDQMSVTYQTNVGGDQLVSMSIYNPAGQIMHQEVPNSMAQYSFT 84
Query: 328 TENYDMFEVCF 360
+N + CF
Sbjct: 85 VKNPGKYMYCF 95
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 31.5 bits (68), Expect = 0.12
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 226 TEIQGQRVDYIIKDSKGHILSQKDTVT-KGKFSFVTENYDMFEVCFISKVPSERRGI 393
T ++GQ++ YI+ D+ G++ ++ K K+S V E + FI+ + S G+
Sbjct: 259 TPLKGQKMHYIVCDTNGYLFGVYSSILGKNKWSLVMERLPIPPFDFITSLNSIHEGL 315
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Frame = -1
Query: 395 GIPLLSDGTLDIKQTSNIS*FSVTNENFPFVTVSFCDKMCPFESLII*STLCPCISVT-- 222
GI ++ L + Q+ + + N V +S C+ + PFE + + + PC
Sbjct: 1344 GISYVNSSLLPLMQSPLVFCLRKNDANDLDVILSVCNLLSPFEVVCLLNRYQPCAGENPL 1403
Query: 221 --SYSPATNTLAC 189
S+S A L+C
Sbjct: 1404 PKSFSKAVEALSC 1416
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 5.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 160 NTHKCLKEELHANVLVAGEY 219
NTH+C++ N + GEY
Sbjct: 258 NTHRCIERSTDCNCPICGEY 277
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 600 YSSVYSRWRASWGLGHLASPVP 665
++ + SR R++W L HL +P P
Sbjct: 215 FTHISSRKRSNWILSHLETPTP 236
>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 330
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 475 PMEVELKRLARPIRSYRSRFHTNEEKRRRN 564
P+EV KR+ R+ +RF +EK R N
Sbjct: 11 PIEVRRKRIVPLFRANHTRFRPVDEKNRIN 40
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,571
Number of Sequences: 5004
Number of extensions: 60188
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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