Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4021
(683 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74035-1|CAA98480.1| 204|Caenorhabditis elegans Hypothetical pr... 120 1e-27
AL117207-7|CAB60397.1| 211|Caenorhabditis elegans Hypothetical ... 61 6e-10
AC199170-2|ABO33261.1| 167|Caenorhabditis elegans Hypothetical ... 48 8e-06
Z68116-10|CAI79231.1| 182|Caenorhabditis elegans Hypothetical p... 30 1.3
Z35639-3|CAA84695.2| 780|Caenorhabditis elegans Hypothetical pr... 29 2.3
U58083-1|AAC47120.1| 780|Caenorhabditis elegans CUL-1 protein. 29 2.3
AF067216-14|AAC17517.4| 729|Caenorhabditis elegans Hypothetical... 29 3.1
AF014940-5|AAB63937.1| 203|Caenorhabditis elegans Suppressor/en... 29 4.1
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z46267-16|CAO78720.1| 576|Caenorhabditis elegans Hypothetical p... 28 5.4
Z46267-4|CAD45594.1| 517|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z46267-3|CAA86421.3| 522|Caenorhabditis elegans Hypothetical pr... 28 5.4
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 28 5.4
AL117206-9|CAL22706.1| 292|Caenorhabditis elegans Hypothetical ... 28 7.1
>Z74035-1|CAA98480.1| 204|Caenorhabditis elegans Hypothetical
protein F47G9.1 protein.
Length = 204
Score = 120 bits (289), Expect = 1e-27
Identities = 75/199 (37%), Positives = 111/199 (55%), Gaps = 4/199 (2%)
Frame = +1
Query: 97 LVLLLSLIWHGTDAIMWSLAPNTHKCLKEELHANVLVAGEYDVTEIQGQRVDYIIKDSKG 276
LV+ LS I ++ + + P KCLKEE+H NV+V GEY+ ++ + D++G
Sbjct: 4 LVIFLSAIVLA-HSLRFYVPPKEKKCLKEEIHKNVVVTGEYEFSQGIQYTGSIHVTDTRG 62
Query: 277 HILSQKDTVT--KGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEG 450
H L +++ KGKF+F + YD+FE+C + P+ G +VSL +K G+EAK Y+
Sbjct: 63 HTLYKRENFADLKGKFAFTADEYDIFEICIENHPPAGHPGEKREVSLILKHGVEAKNYDD 122
Query: 451 IGEAAKLKPMEVELKRLARPIRSYRSRFHTNEEKRRRNERYQ*INE**SFILPY--ILDG 624
I +A KLKP+EVEL+RL S F R+R E + NE + + Y I
Sbjct: 123 IAKAEKLKPLEVELRRLEDMADSITKDF---AFMRQREEEMRNTNESTNSRVLYLSIFSM 179
Query: 625 VPLGVWATWQVLYLRRFFK 681
+ L A WQVL+LR +FK
Sbjct: 180 LCLLGLAIWQVLFLRNYFK 198
>AL117207-7|CAB60397.1| 211|Caenorhabditis elegans Hypothetical
protein Y60A3A.9 protein.
Length = 211
Score = 61.3 bits (142), Expect = 6e-10
Identities = 51/210 (24%), Positives = 92/210 (43%), Gaps = 12/210 (5%)
Frame = +1
Query: 88 VQYLVLLLSLIWHGTDAIMWSLAPNTHKCLKEELHANVLVAGEYDVTEIQGQRVDY---- 255
++ L+ LLSL + D++ + +A KC EE+ +V G Y V Y
Sbjct: 1 MRLLIALLSLATYA-DSLYFHIAETEKKCFIEEIPDETMVTGNYKVQLYDPNTKGYGDYP 59
Query: 256 ------IIKDSKGHILSQKDTVTKGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDI 417
+KD + ++ K +G+F+F + +C S + G +V LDI
Sbjct: 60 NIGMHVEVKDPEDKVILSKLYTAEGRFTFTSNTPGEHVICIYSNSTAWFNGAQLRVHLDI 119
Query: 418 KIGIEAKTYEGIGEAAKLKPMEVELKRLARPIRSYRSRFHTNEEKRRRNERYQ*INE**S 597
+ G A+ Y I + KL +++ +++L + +R R ER++ +E +
Sbjct: 120 QAGDHAQDYAQIAQKDKLNELQLRIRQLLDQVDQITKE---QNYQRYREERFRQTSESTN 176
Query: 598 FILPY--ILDGVPLGVWATWQVLYLRRFFK 681
+ Y I V L + WQ+ +LR FF+
Sbjct: 177 SRVFYWSIAQVVVLAITGAWQMRHLRGFFE 206
>AC199170-2|ABO33261.1| 167|Caenorhabditis elegans Hypothetical
protein T08D2.1 protein.
Length = 167
Score = 47.6 bits (108), Expect = 8e-06
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 10/138 (7%)
Frame = +1
Query: 88 VQYLVLLLSLIWHGTDAIMWSLAPNTHKCLKEELHANVLVAGEYDVTEIQGQRVDY---- 255
++ L+ LLSL + D++ + +A KC EE+ +V G Y V Y
Sbjct: 1 MRLLIALLSLATYA-DSLYFHIAETEKKCFIEEIPDETMVTGNYKVQLYDPNTKGYGDYP 59
Query: 256 ------IIKDSKGHILSQKDTVTKGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDI 417
+KD + ++ K ++G+F+F + +C S + G +V LDI
Sbjct: 60 NIGMHVEVKDPEDKVILSKLYTSEGRFTFTSNTPGEHVICIYSNTTAWFNGAQLRVHLDI 119
Query: 418 KIGIEAKTYEGIGEAAKL 471
+ G A+ Y + E KL
Sbjct: 120 QAGDHAQDYAQVEEERKL 137
>Z68116-10|CAI79231.1| 182|Caenorhabditis elegans Hypothetical
protein F42F12.11 protein.
Length = 182
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/50 (26%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +1
Query: 181 EELHANV-LVAGEYDVTEIQGQRVDYIIKDSKGHILSQKDTVTKGKFSFV 327
E++ N+ L G Y+V++ G +VD ++ ++ +++S++ + +GK + V
Sbjct: 73 EDIQPNIRLYDGHYEVSDGYGNQVDLVLTVAQRNLISERCFLLQGKIAHV 122
>Z35639-3|CAA84695.2| 780|Caenorhabditis elegans Hypothetical
protein D2045.6 protein.
Length = 780
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +1
Query: 145 WSLAPNTHKCLKEELHANVLVAGEYDVTEIQGQRVDYIIKDSKGHILS 288
W P T L ++L + + G++ + G+R+ ++ S+G I S
Sbjct: 550 WPTFPTTPITLPQQLSKTIEIFGQFYNEKFNGRRLTWVYSQSRGEITS 597
>U58083-1|AAC47120.1| 780|Caenorhabditis elegans CUL-1 protein.
Length = 780
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +1
Query: 145 WSLAPNTHKCLKEELHANVLVAGEYDVTEIQGQRVDYIIKDSKGHILS 288
W P T L ++L + + G++ + G+R+ ++ S+G I S
Sbjct: 550 WPTFPTTPITLPQQLSKTIEIFGQFYNEKFNGRRLTWVYSQSRGEITS 597
>AF067216-14|AAC17517.4| 729|Caenorhabditis elegans Hypothetical
protein C35E7.1 protein.
Length = 729
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/95 (23%), Positives = 39/95 (41%)
Frame = +1
Query: 118 IWHGTDAIMWSLAPNTHKCLKEELHANVLVAGEYDVTEIQGQRVDYIIKDSKGHILSQKD 297
+W+G I+ N + E++H LV YD + +I I+ KD
Sbjct: 244 VWNGRSEIIEQYVYNCEQGQFEQVHVPELV---YDPNHEVPMNILFIQMSKDRPIVIMKD 300
Query: 298 TVTKGKFSFVTENYDMFEVCFISKVPSERRGIPHQ 402
+FV + YD CF++ P + + +P +
Sbjct: 301 E----DGNFVKQEYDSLIDCFVAISPKDAKILPRE 331
>AF014940-5|AAB63937.1| 203|Caenorhabditis elegans
Suppressor/enhancer of lin-12 protein9 protein.
Length = 203
Score = 28.7 bits (61), Expect = 4.1
Identities = 36/179 (20%), Positives = 72/179 (40%), Gaps = 5/179 (2%)
Frame = +1
Query: 160 NTHKCLKEELHANVLVAGEYDVTEIQGQRVDYIIKDSKGHILSQKDTVTKGKFSFVTENY 339
N +C + L + + ++V E +D I + + + + GKF+F
Sbjct: 26 NEEQCFFDRLTSGTKMGLMFEVAEGGFLDIDVKITGPDNKEIYKGERESSGKFTFAAHMD 85
Query: 340 DMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEGIG---EAAKLKPMEVELKRLARP 510
++ CF +K+ + P V ++I + G +AA +E ++ L+
Sbjct: 86 GVYTYCFGNKMSTM---TPKAVMFTVEITEPHQQAPGAAANQDAADNAKLEEMVRELSSA 142
Query: 511 IRSYRSRFHTNEEKRRRNERYQ*INE**S--FILPYILDGVPLGVWATWQVLYLRRFFK 681
+ S + H E R ++ INE + ++ + L Q+ YL+RFF+
Sbjct: 143 LMSVK---HEQEYMEVRERVHRNINENTNSRVVMWAAFEAFVLVGMTVGQIFYLKRFFE 198
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 542 MRKREEEMRDTNESTNNRVLFFRIFSMACLLG 637
M RE R+ NE+TN+RV+ + F L+G
Sbjct: 153 MEVRERVHRNINENTNSRVVMWAAFEAFVLVG 184
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 328 TENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEG 450
T+ D +CFI + + + Q +D+KIG + +EG
Sbjct: 3213 TDRSDESSLCFIDECSLAEKPLCEQKCMDMKIGYKCDCFEG 3253
>Z46267-16|CAO78720.1| 576|Caenorhabditis elegans Hypothetical
protein F49E2.2c protein.
Length = 576
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 157 PNTHKCLKEELHANVLVAGEYDVTEIQGQRVDYIIKDSKGHILSQKDT 300
P HK ++LH + V ++ E ++VD ++DS+ + S T
Sbjct: 269 PEDHKDWHQDLHEHAAVVAAEEIKENVEKKVDEAVQDSRSNSTSSVAT 316
>Z46267-4|CAD45594.1| 517|Caenorhabditis elegans Hypothetical
protein F49E2.2b protein.
Length = 517
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 157 PNTHKCLKEELHANVLVAGEYDVTEIQGQRVDYIIKDSKGHILSQKDT 300
P HK ++LH + V ++ E ++VD ++DS+ + S T
Sbjct: 215 PEDHKDWHQDLHEHAAVVAAEEIKENVEKKVDEAVQDSRSNSTSSVAT 262
>Z46267-3|CAA86421.3| 522|Caenorhabditis elegans Hypothetical
protein F49E2.2a protein.
Length = 522
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 157 PNTHKCLKEELHANVLVAGEYDVTEIQGQRVDYIIKDSKGHILSQKDT 300
P HK ++LH + V ++ E ++VD ++DS+ + S T
Sbjct: 215 PEDHKDWHQDLHEHAAVVAAEEIKENVEKKVDEAVQDSRSNSTSSVAT 262
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 328 TENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEG 450
T+ D +CFI + + + Q +D+KIG + +EG
Sbjct: 3213 TDRSDESSLCFIDECSLAEKPLCEQKCMDMKIGYKCDCFEG 3253
>AL117206-9|CAL22706.1| 292|Caenorhabditis elegans Hypothetical
protein Y67A10A.11 protein.
Length = 292
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 242 CPCISVTSYSPATNTLACN 186
CPCI VT+ NT ACN
Sbjct: 62 CPCIGVTTKLMICNTQACN 80
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,085,382
Number of Sequences: 27780
Number of extensions: 335458
Number of successful extensions: 871
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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