Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4019
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   4.9  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.9  
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...    26   6.5  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   8.6  

>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +2

Query: 137 LSIWTVYLYFYLVNKLKENLKSRGRTLFKFYTTSIKHY*F*ITMSYIILYIAG*SE 304
           + I T+Y  F    ++K  L S  R+LFKFY   +  +   ++ S+I +   G S+
Sbjct: 166 IGISTLYYCFVQFMEVKSALISYDRSLFKFYPIDL--FVLLLSQSFICIIAFGVSD 219


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = +2

Query: 110 RTSKLHTERLSIWTVYLYFYLVNKLKENLKSRGRTLFKFYTTSIK 244
           R  KLH  RL      L     +KLK  L  +  TL K +  SIK
Sbjct: 286 RLQKLHEARLQQELFKLASVFESKLKNELTEQAITLEKLHLQSIK 330


>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 742 PSKSRASQNLPPDRKRDPTEKFRRETQWA 656
           P   R + N+P D   +  E+ R+E +WA
Sbjct: 130 PEDIRKTFNIPNDFTPEEEEQIRKENEWA 158


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 45  YQCQCFPLLYWFDIAFN*TSLIELQNFIQRDSQFGPYIFIFIW-LTN 182
           Y+   F ++ + ++  +    ++L N +Q   + GP+ F + W LTN
Sbjct: 79  YRVHKFEVIPYRNLLADDQDELDLYNLLQNHLKTGPFYFSYTWDLTN 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,461
Number of Sequences: 5004
Number of extensions: 57662
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)