Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4019
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.2  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   9.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 591 RVLKKNRRQKFHCFGTFLIQKLAH*VSRRNFSVGSRFRSG 710
           RVL  NR+QK    GT +I+ +     +  ++  +R   G
Sbjct: 529 RVLPINRKQKVFPNGTLIIENVERMSDQATYTCVARNAQG 568


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 501 DIIGILKQGYLKFKIWIKQIMTKILRQLI 415
           +I+  LKQ Y+K     K I   ILR LI
Sbjct: 342 NILKFLKQKYVKNSKLEKVIKHDILRMLI 370


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 585 IYRVLKKNRRQKFHCFGTFLIQKLAH*VSRRNFSVGSRFRSGGR 716
           +Y    + + +KF CF   + QKL H +     +V  +  SG R
Sbjct: 40  MYEANSEEQMKKFGCFEACVFQKL-HFMDGNTLNV-EKLESGTR 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,557
Number of Sequences: 438
Number of extensions: 4072
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)