Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4018
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    27   1.9  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    26   2.6  
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    26   2.6  
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc...    25   7.8  

>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 299 YIWYCVQKCFGQHTY 343
           Y+W C+QKCF    Y
Sbjct: 109 YVWDCLQKCFDAKLY 123


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 232 PTVHPSCRLSTIHSPMVVSFIKLYMV 309
           PT+HP+ RL+TI   +V    K Y +
Sbjct: 410 PTIHPATRLNTIQRAVVSQAKKGYTI 435


>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 198 GLKLLAAYANSTNSSSFLQIVDYSFPHGCKF 290
           GLK L    N        +I++Y+  HGC F
Sbjct: 15  GLKSLTWTENPVPDEEAFRIMNYALSHGCSF 45


>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 349

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +3

Query: 144 VIYNNFEICLHQ*LMWNPGLKLLAAYANSTNSSSFLQIVDYSFPHGCK 287
           V+   F I L     W    + L    NS +S  F+Q+ D   P+ CK
Sbjct: 222 VLPKKFNIDLELTTFWYG--RFLLEGINSISSDEFIQLWDNRLPYPCK 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,926,400
Number of Sequences: 5004
Number of extensions: 37439
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)