Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4018
(480 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 27 0.14
Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 21 9.1
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.1
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 21 9.1
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 26.6 bits (56), Expect = 0.14
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 428 LLQ*KAECTQITERILWIEELQVKIQGVHMCVVQSIFEHSTI 303
+LQ Q+ E L+I+E+ G + C V++ F H T+
Sbjct: 1316 VLQSSDRLRQLPEGSLFIKEVDRTDAGEYSCYVENTFGHDTV 1357
>Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1
protein.
Length = 402
Score = 20.6 bits (41), Expect = 9.1
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 241 HPSCRLSTIHSPMVVSFIKLYMVLCSKML 327
HP+C L + VVS + V C ML
Sbjct: 181 HPTCALDLTPTYAVVSSSISFYVPCIVML 209
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.1
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = -1
Query: 372 GTAGEDSGCSYVCCPKHF 319
G G+ + +Y CCP+ +
Sbjct: 164 GMPGKKNTITYQCCPEPY 181
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.1
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = -1
Query: 372 GTAGEDSGCSYVCCPKHF 319
G G+ + +Y CCP+ +
Sbjct: 164 GMPGKKNTITYQCCPEPY 181
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.1
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = -1
Query: 372 GTAGEDSGCSYVCCPKHF 319
G G+ + +Y CCP+ +
Sbjct: 164 GMPGKKNTITYQCCPEPY 181
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.1
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = -1
Query: 372 GTAGEDSGCSYVCCPKHF 319
G G+ + +Y CCP+ +
Sbjct: 164 GMPGKKNTITYQCCPEPY 181
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.1
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = -1
Query: 372 GTAGEDSGCSYVCCPKHF 319
G G+ + +Y CCP+ +
Sbjct: 164 GMPGKKNTITYQCCPEPY 181
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.1
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = -1
Query: 372 GTAGEDSGCSYVCCPKHF 319
G G+ + +Y CCP+ +
Sbjct: 164 GMPGKKNTITYQCCPEPY 181
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 9.1
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = -1
Query: 372 GTAGEDSGCSYVCCPKHF 319
G G+ + +Y CCP+ +
Sbjct: 232 GMPGKKNTITYQCCPEPY 249
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 9.1
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = -1
Query: 372 GTAGEDSGCSYVCCPKHF 319
G G+ + +Y CCP+ +
Sbjct: 232 GMPGKKNTITYQCCPEPY 249
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 20.6 bits (41), Expect = 9.1
Identities = 8/27 (29%), Positives = 11/27 (40%)
Frame = +1
Query: 214 LHMLIPPTVHPSCRLSTIHSPMVVSFI 294
LH+ PP PS + P S +
Sbjct: 673 LHLTSPPARSPSSQAQASQCPQTASLL 699
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,607
Number of Sequences: 438
Number of extensions: 2610
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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