Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4015
         (324 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0193 - 21132793-21132986,21133376-21133504,21133648-21133681     26   5.9  
07_03_0868 - 22157711-22157937,22158112-22158758,22158918-22159570     26   5.9  
08_01_0666 + 5748821-5749249                                           26   7.8  
02_02_0380 + 9568775-9569250,9569360-9569672                           26   7.8  

>11_06_0193 - 21132793-21132986,21133376-21133504,21133648-21133681
          Length = 118

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 111 RAS*ISPNCSCHDWFE-LLSDQRVTCF 34
           R+S     C+CHD F+ LL+D    C+
Sbjct: 26  RSSEFGHRCACHDGFQNLLNDTSYPCY 52


>07_03_0868 - 22157711-22157937,22158112-22158758,22158918-22159570
          Length = 508

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 156 YSIGVNPVT-RQRVLLRAS*ISPNCSCHDWFELL 58
           +++ VNP T R   L R+    P CSC+D F+ L
Sbjct: 95  HNVVVNPATGRWARLPRSPPPPPGCSCNDVFDYL 128


>08_01_0666 + 5748821-5749249
          Length = 142

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 148 WSKPCYSTTCTIKGELN 98
           WS PCY    T+  EL+
Sbjct: 51  WSSPCYGPLATVSSELD 67


>02_02_0380 + 9568775-9569250,9569360-9569672
          Length = 262

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 165 VNIYSIGVNPVTRQRV-LLRAS*ISPNCSCHDWFELL 58
           + IYS G+ PV  QRV  ++   +    + HD+F L+
Sbjct: 145 IGIYSAGIIPVIYQRVPCIKKGGVRFTINGHDYFNLV 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,960,366
Number of Sequences: 37544
Number of extensions: 99724
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)