Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4015
         (324 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    27   4.1  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    27   4.1  
Z83318-1|CAB05902.1| 1358|Caenorhabditis elegans Hypothetical pr...    26   5.4  
U29244-14|AAC71095.1|  774|Caenorhabditis elegans Fzo (fzo mitoc...    26   7.2  
Z81027-2|CAB02687.1|  282|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -1

Query: 87   CSCHDWFELLSDQRVTC 37
            CSC D F LLSDQ+ TC
Sbjct: 3608 CSCPDQFVLLSDQK-TC 3623


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -1

Query: 87   CSCHDWFELLSDQRVTC 37
            CSC D F LLSDQ+ TC
Sbjct: 3608 CSCPDQFVLLSDQK-TC 3623


>Z83318-1|CAB05902.1| 1358|Caenorhabditis elegans Hypothetical
           protein F55B11.1 protein.
          Length = 1358

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 89  LGDIQLALNSTRCRVTGFTPI 151
           + DI L L    CR TG+ PI
Sbjct: 145 ISDINLGLQGNLCRCTGYRPI 165


>U29244-14|AAC71095.1|  774|Caenorhabditis elegans Fzo (fzo
           mitochondrial fusion protein)related protein 1 protein.
          Length = 774

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 167 VQGSSLEISKFQQSDNPSRLDLDL 238
           V+GS  E+   Q  DNP ++D+ +
Sbjct: 140 VEGSEGEVGHLQLDDNPQKIDMKM 163


>Z81027-2|CAB02687.1|  282|Caenorhabditis elegans Hypothetical
           protein AH10.3 protein.
          Length = 282

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 169 NGKHLFYWSKPC 134
           N KHL YWSK C
Sbjct: 115 NRKHLQYWSKKC 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,952,105
Number of Sequences: 27780
Number of extensions: 87487
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)