Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4010
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer...    26   6.4  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    26   6.4  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    26   6.4  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    25   8.5  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   8.5  

>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 250

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 161 CGVCLARASTSQNG*FGQMAGWSPAGY 81
           CGVC+ +  T +N  +G+  G +P  +
Sbjct: 190 CGVCILKGKTHENLPWGEWCGNTPFAF 216


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 208 IARAASNSVPKYPADFPAALCPNY--PYCW*IHKLPTLINNKSTIF 339
           I+ AA+N V +Y   F  ++  N+  P  W I  L   INN ST+F
Sbjct: 410 ISTAAANGVYEY---FDKSMKKNWAGPEHWRIQALRKNINNASTVF 452


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -1

Query: 264 GSRKISRILGHRIRRSSSDWQDGWVAHPFWYRHSLW 157
           GSR      GH + RS + W  G +       H LW
Sbjct: 376 GSRLKIHASGHVVERSYASWLGGSILSSLGTFHQLW 411


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 177 WYRHSLWGVLSEG 139
           W RH+LW  L EG
Sbjct: 329 WVRHTLWSCLEEG 341


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 178 EWVRNPAILPIARAASNSVPKYPADFPAALCP 273
           +W    A L +  + ++S PK  AD+ AAL P
Sbjct: 151 KWPSKVAALQLLGSLASSSPKAVADYMAALIP 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,392,331
Number of Sequences: 5004
Number of extensions: 78303
Number of successful extensions: 200
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)