Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4010
(738 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC007770-1|AAH07770.1| 452|Homo sapiens golgi reassembly stacki... 35 0.27
AK027349-1|BAB55054.1| 452|Homo sapiens protein ( Homo sapiens ... 35 0.27
AK023201-1|BAB14459.1| 452|Homo sapiens protein ( Homo sapiens ... 35 0.27
AK023082-1|BAB14395.1| 452|Homo sapiens protein ( Homo sapiens ... 35 0.27
AC010092-2|AAY15076.1| 452|Homo sapiens unknown protein. 35 0.27
EF127492-1|ABO33171.1| 2087|Homo sapiens Rho GTPase-activating p... 34 0.61
BC113429-1|AAI13430.1| 1738|Homo sapiens Rho GTPase-activating p... 34 0.61
BC104898-1|AAI04899.1| 1738|Homo sapiens Rho GTPase-activating p... 34 0.61
AY194287-1|AAO43677.1| 1738|Homo sapiens rac GTPase activating p... 34 0.61
AB018255-1|BAA34432.2| 1770|Homo sapiens KIAA0712 protein protein. 34 0.61
AL713999-17|CAI95085.1| 466|Homo sapiens metaxin 1 protein. 31 5.7
AL713999-16|CAI95086.1| 435|Homo sapiens metaxin 1 protein. 31 5.7
AB023208-1|BAA76835.2| 630|Homo sapiens KIAA0991 protein protein. 30 7.5
AK023098-1|BAB14403.1| 596|Homo sapiens protein ( Homo sapiens ... 30 10.0
>BC007770-1|AAH07770.1| 452|Homo sapiens golgi reassembly stacking
protein 2, 55kDa protein.
Length = 452
Score = 35.1 bits (77), Expect = 0.27
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 100 PAICPNYPFCDVDALAKHTPQGMPIPEWVRNPAILPIARAASNSVPKY-PADFPAALCPN 276
PA PN P +++ A H G+ +PE V NP + P+ ++P P P+ P+
Sbjct: 309 PAGLPNLPNLNLNLPAPHIMPGVGLPELV-NPGLPPLPSMPPRNLPGIAPLPLPSEFLPS 367
Query: 277 YP 282
+P
Sbjct: 368 FP 369
>AK027349-1|BAB55054.1| 452|Homo sapiens protein ( Homo sapiens
cDNA FLJ14443 fis, clone HEMBB1001151, moderately
similar to Rattus norvegicus golgi stacking protein
homolog GRASP55 mRNA. ).
Length = 452
Score = 35.1 bits (77), Expect = 0.27
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 100 PAICPNYPFCDVDALAKHTPQGMPIPEWVRNPAILPIARAASNSVPKY-PADFPAALCPN 276
PA PN P +++ A H G+ +PE V NP + P+ ++P P P+ P+
Sbjct: 309 PAGLPNLPNLNLNLPAPHIMPGVGLPELV-NPGLPPLPSMPPRNLPGIAPLPLPSEFLPS 367
Query: 277 YP 282
+P
Sbjct: 368 FP 369
>AK023201-1|BAB14459.1| 452|Homo sapiens protein ( Homo sapiens
cDNA FLJ13139 fis, clone NT2RP3003203, moderately
similar to Rattus norvegicus golgi stacking protein
homolog GRASP55 mRNA. ).
Length = 452
Score = 35.1 bits (77), Expect = 0.27
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 100 PAICPNYPFCDVDALAKHTPQGMPIPEWVRNPAILPIARAASNSVPKY-PADFPAALCPN 276
PA PN P +++ A H G+ +PE V NP + P+ ++P P P+ P+
Sbjct: 309 PAGLPNLPNLNLNLPAPHIMPGVGLPELV-NPGLPPLPSMPPRNLPGIAPLPLPSEFLPS 367
Query: 277 YP 282
+P
Sbjct: 368 FP 369
>AK023082-1|BAB14395.1| 452|Homo sapiens protein ( Homo sapiens
cDNA FLJ13020 fis, clone NT2RP3000739, weakly similar to
ATROPHIN-1. ).
Length = 452
Score = 35.1 bits (77), Expect = 0.27
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 100 PAICPNYPFCDVDALAKHTPQGMPIPEWVRNPAILPIARAASNSVPKY-PADFPAALCPN 276
PA PN P +++ A H G+ +PE V NP + P+ ++P P P+ P+
Sbjct: 309 PAGLPNLPNLNLNLPAPHIMPGVGLPELV-NPGLPPLPSMPPRNLPGIAPLPLPSEFLPS 367
Query: 277 YP 282
+P
Sbjct: 368 FP 369
>AC010092-2|AAY15076.1| 452|Homo sapiens unknown protein.
Length = 452
Score = 35.1 bits (77), Expect = 0.27
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 100 PAICPNYPFCDVDALAKHTPQGMPIPEWVRNPAILPIARAASNSVPKY-PADFPAALCPN 276
PA PN P +++ A H G+ +PE V NP + P+ ++P P P+ P+
Sbjct: 309 PAGLPNLPNLNLNLPAPHIMPGVGLPELV-NPGLPPLPSMPPRNLPGIAPLPLPSEFLPS 367
Query: 277 YP 282
+P
Sbjct: 368 FP 369
>EF127492-1|ABO33171.1| 2087|Homo sapiens Rho GTPase-activating
protein protein.
Length = 2087
Score = 33.9 bits (74), Expect = 0.61
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 172 IPEWVRNPAILPIARAASNSVPKYPADFPAALCP 273
+PE VR+ A +P+ + SVP +P FPA L P
Sbjct: 1382 LPEKVRDGARVPLLHLRAESVPAHPCGFPAPLPP 1415
>BC113429-1|AAI13430.1| 1738|Homo sapiens Rho GTPase-activating
protein protein.
Length = 1738
Score = 33.9 bits (74), Expect = 0.61
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 172 IPEWVRNPAILPIARAASNSVPKYPADFPAALCP 273
+PE VR+ A +P+ + SVP +P FPA L P
Sbjct: 1033 LPEKVRDGARVPLLHLRAESVPAHPCGFPAPLPP 1066
>BC104898-1|AAI04899.1| 1738|Homo sapiens Rho GTPase-activating
protein protein.
Length = 1738
Score = 33.9 bits (74), Expect = 0.61
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 172 IPEWVRNPAILPIARAASNSVPKYPADFPAALCP 273
+PE VR+ A +P+ + SVP +P FPA L P
Sbjct: 1033 LPEKVRDGARVPLLHLRAESVPAHPCGFPAPLPP 1066
>AY194287-1|AAO43677.1| 1738|Homo sapiens rac GTPase activating
protein protein.
Length = 1738
Score = 33.9 bits (74), Expect = 0.61
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 172 IPEWVRNPAILPIARAASNSVPKYPADFPAALCP 273
+PE VR+ A +P+ + SVP +P FPA L P
Sbjct: 1033 LPEKVRDGARVPLLHLRAESVPAHPCGFPAPLPP 1066
>AB018255-1|BAA34432.2| 1770|Homo sapiens KIAA0712 protein protein.
Length = 1770
Score = 33.9 bits (74), Expect = 0.61
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 172 IPEWVRNPAILPIARAASNSVPKYPADFPAALCP 273
+PE VR+ A +P+ + SVP +P FPA L P
Sbjct: 1065 LPEKVRDGARVPLLHLRAESVPAHPCGFPAPLPP 1098
>AL713999-17|CAI95085.1| 466|Homo sapiens metaxin 1 protein.
Length = 466
Score = 30.7 bits (66), Expect = 5.7
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 71 WPASTQPDSTQPFAQT-IRSAMWTPSLSTPHR 163
WP T+P S +P A + +R + WT TP R
Sbjct: 35 WPRRTRPRSPEPAAPSGVRGSTWTRRRDTPRR 66
>AL713999-16|CAI95086.1| 435|Homo sapiens metaxin 1 protein.
Length = 435
Score = 30.7 bits (66), Expect = 5.7
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 71 WPASTQPDSTQPFAQT-IRSAMWTPSLSTPHR 163
WP T+P S +P A + +R + WT TP R
Sbjct: 35 WPRRTRPRSPEPAAPSGVRGSTWTRRRDTPRR 66
>AB023208-1|BAA76835.2| 630|Homo sapiens KIAA0991 protein protein.
Length = 630
Score = 30.3 bits (65), Expect = 7.5
Identities = 14/52 (26%), Positives = 20/52 (38%)
Frame = -1
Query: 207 WQDGWVAHPFWYRHSLWGVLSEGVHIAERIVWANGWVESGWVLAGQSYRGQS 52
W+ GW +W L H W+ G + SGW A + RG +
Sbjct: 3 WRGGWGIRRGLPVKIIWARLWRARHARRECSWSTGSIWSGWEWAQEQRRGST 54
>AK023098-1|BAB14403.1| 596|Homo sapiens protein ( Homo sapiens
cDNA FLJ13036 fis, clone NT2RP3001253, weakly similar to
NUF1 PROTEIN. ).
Length = 596
Score = 29.9 bits (64), Expect = 10.0
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +3
Query: 543 DSPDMYSANNDLPNNRFSPSLCQ*NIAVNHNQLPA--YRKTSKTIPNFEKRL 692
D P Y+ L + R+ LC N +++ + P Y++T + NF K L
Sbjct: 331 DEPSKYNQQQALIDQRYFQVLCSINSIIHNPRAPVIIYKRTKGGVQNFNKDL 382
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,168,932
Number of Sequences: 237096
Number of extensions: 2876885
Number of successful extensions: 9794
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9794
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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