Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4010
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81550-3|CAD44141.1|  548|Caenorhabditis elegans Hypothetical pr...    33   0.21 
Z81550-2|CAB04478.2|  548|Caenorhabditis elegans Hypothetical pr...    33   0.21 
U28929-5|AAA68348.2|  438|Caenorhabditis elegans Gaba/glycine re...    29   2.6  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    29   3.4  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    29   3.4  
Z99283-3|CAB16538.1|  327|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U58742-5|AAB36859.3|  711|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z81550-3|CAD44141.1|  548|Caenorhabditis elegans Hypothetical
           protein F55F3.2b protein.
          Length = 548

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +3

Query: 498 QSVGTLLKCVTSIHYDSPDMYSANNDLPNNRFSPSLCQ*N 617
           QS GT+L C+ ++ YD   + +A+N LP +R   S+ Q N
Sbjct: 266 QSFGTILTCLRNVTYDK--IVAADNSLPGHRMKWSIVQDN 303


>Z81550-2|CAB04478.2|  548|Caenorhabditis elegans Hypothetical
           protein F55F3.2a protein.
          Length = 548

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +3

Query: 498 QSVGTLLKCVTSIHYDSPDMYSANNDLPNNRFSPSLCQ*N 617
           QS GT+L C+ ++ YD   + +A+N LP +R   S+ Q N
Sbjct: 266 QSFGTILTCLRNVTYDK--IVAADNSLPGHRMKWSIVQDN 303


>U28929-5|AAA68348.2|  438|Caenorhabditis elegans Gaba/glycine
           receptor family (seegbr) protein 3 protein.
          Length = 438

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 317 STTSQRFLRMYTFYIYNLED*TH*SAMLLWNYHLISNKTLTAQHGLGIT 463
           S T  RF R+Y +Y+  +   T+ S  + W    I  + L A+  LG++
Sbjct: 238 SQTFYRFKRLYGYYVLQMYLPTYLSVFISWIAFWIDTRALPARITLGVS 286


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
           lineage protein 13 protein.
          Length = 2248

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 233 CPSIRLIFRLPYALTTHTAGEYTSYLR*STTSQRFLRMYTFYIY 364
           C     ++   Y LT H   E+  YLR  T  Q+ L +   Y+Y
Sbjct: 361 CDICYRVYPSRYELTKHDCKEFAEYLRQLTFKQQTLHLEAAYMY 404


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
           protein LIN-13 protein.
          Length = 2248

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 233 CPSIRLIFRLPYALTTHTAGEYTSYLR*STTSQRFLRMYTFYIY 364
           C     ++   Y LT H   E+  YLR  T  Q+ L +   Y+Y
Sbjct: 361 CDICYRVYPSRYELTKHDCKEFAEYLRQLTFKQQTLHLEAAYMY 404


>Z99283-3|CAB16538.1|  327|Caenorhabditis elegans Hypothetical
           protein Y70C5C.4 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +1

Query: 508 ALCLNA*PPFIMIVLICIPRIMTSQITDFLLVFVN 612
           ALC+    PF+++++ C    ++S +  F ++F+N
Sbjct: 242 ALCVQVTVPFVVVLVPCFYLNVSSALEHFDMIFIN 276


>U58742-5|AAB36859.3|  711|Caenorhabditis elegans Hypothetical
           protein F31A3.5 protein.
          Length = 711

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/56 (28%), Positives = 22/56 (39%)
 Frame = +1

Query: 100 PAICPNYPFCDVDALAKHTPQGMPIPEWVRNPAILPIARAASNSVPKYPADFPAAL 267
           PA   N  F    A A H     P+   ++N        A   ++PK PAD   A+
Sbjct: 72  PAAINNINFRPNPAKAAHERHSQPVTNMLQNMLTFNRQSAPGRALPKLPADLYTAI 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,787,867
Number of Sequences: 27780
Number of extensions: 446106
Number of successful extensions: 1030
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)