Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4009
         (588 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81550-3|CAD44141.1|  548|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81550-2|CAB04478.2|  548|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    29   2.4  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    29   2.4  
AF039713-13|AAB96719.2|  690|Caenorhabditis elegans Hypothetical...    29   3.2  
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z81550-3|CAD44141.1|  548|Caenorhabditis elegans Hypothetical
           protein F55F3.2b protein.
          Length = 548

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +1

Query: 490 QSGGTLLKCVTSIHYDSPDMYSANNDLPNNR 582
           QS GT+L C+ ++ YD   + +A+N LP +R
Sbjct: 266 QSFGTILTCLRNVTYDK--IVAADNSLPGHR 294


>Z81550-2|CAB04478.2|  548|Caenorhabditis elegans Hypothetical
           protein F55F3.2a protein.
          Length = 548

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +1

Query: 490 QSGGTLLKCVTSIHYDSPDMYSANNDLPNNR 582
           QS GT+L C+ ++ YD   + +A+N LP +R
Sbjct: 266 QSFGTILTCLRNVTYDK--IVAADNSLPGHR 294


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
           lineage protein 13 protein.
          Length = 2248

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 225 CPSIRLIFRLPYALTTHTAGEYTSYLR*STTSQRFLRMYTFYIY 356
           C     ++   Y LT H   E+  YLR  T  Q+ L +   Y+Y
Sbjct: 361 CDICYRVYPSRYELTKHDCKEFAEYLRQLTFKQQTLHLEAAYMY 404


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
           protein LIN-13 protein.
          Length = 2248

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 225 CPSIRLIFRLPYALTTHTAGEYTSYLR*STTSQRFLRMYTFYIY 356
           C     ++   Y LT H   E+  YLR  T  Q+ L +   Y+Y
Sbjct: 361 CDICYRVYPSRYELTKHDCKEFAEYLRQLTFKQQTLHLEAAYMY 404


>AF039713-13|AAB96719.2|  690|Caenorhabditis elegans Hypothetical
           protein F57B10.1 protein.
          Length = 690

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 430 PPNTGWVSLCMSKLPPLSFHQSGG-TLLKCVTSI 528
           PP++G + +  +   P S+H SGG  L+ C  SI
Sbjct: 95  PPDSGSLPISPASTSPSSYHSSGGEDLMDCYPSI 128


>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
            T28C6.9 protein.
          Length = 1861

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 494  D*WNDKGGNLDMHSDTQPVL 435
            D WND  G +D   DTQ VL
Sbjct: 1529 DGWNDDDGEIDRMKDTQKVL 1548


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,446,852
Number of Sequences: 27780
Number of extensions: 363978
Number of successful extensions: 779
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)