Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4008
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 123 1e-28
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891... 111 8e-25
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670... 100 1e-21
09_02_0115 + 4413714-4414475 29 3.0
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122... 29 4.0
03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338... 29 4.0
12_02_0312 + 17395716-17398112 29 5.3
11_05_0100 - 19056465-19056470,19057043-19057276,19058391-190585... 29 5.3
05_06_0238 - 26621843-26622457,26622625-26623375,26624372-266244... 29 5.3
02_05_0534 + 29819323-29819900,29820122-29820202,29821007-298210... 29 5.3
01_01_0784 + 6068230-6068580,6068676-6069127,6070208-6070736 28 7.0
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229 28 9.3
03_02_0011 - 4909292-4909434,4909520-4909626,4910100-4910171,491... 28 9.3
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 123 bits (297), Expect = 1e-28
Identities = 79/227 (34%), Positives = 121/227 (53%), Gaps = 11/227 (4%)
Frame = +2
Query: 107 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 286
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ KI
Sbjct: 1 MNDADVAKQIQQMVRFIRQEAEEKASEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
Query: 287 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 466
I+ S LN +R+KVL+ ++D V ++ ++A K+L V + Y LL L+VQ
Sbjct: 61 QVEVRKKIEYSMQLNASRIKVLQAQDDLVNSMKEDATKQLLRVSHNHHEYKNLLKELVVQ 120
Query: 467 ALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIK-KDVVLKVDTENFLSPDT---- 631
L +L EP V +R R+ D VES+L A+ +Y +K + + VD + +L P
Sbjct: 121 GLLRLKEPAVLLRCRKEDHHHVESVLHSAKNEYASKAEVHHPEILVDHDVYLPPSPSSHD 180
Query: 632 -----C-GGIELVAARGRIKISNTLESRLELIAQQLLPEIRNALFGR 754
C GG+ L + G+I NTL++RLE++ ++ LPEIR LFG+
Sbjct: 181 SHERFCSGGVVLASRDGKIVCENTLDARLEVVFRKKLPEIRKLLFGQ 227
>05_05_0231 +
23488588-23488689,23488775-23488875,23489012-23489168,
23489365-23489594,23489696-23489795,23489878-23489916
Length = 242
Score = 111 bits (266), Expect = 8e-25
Identities = 78/238 (32%), Positives = 122/238 (51%), Gaps = 22/238 (9%)
Frame = +2
Query: 107 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 286
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ +I
Sbjct: 1 MNDADVGKQIQQMVRFILQEAEEKASEISVAAEEEFNIEKLQLVESEKRRIRQDYERKAK 60
Query: 287 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIV- 463
I+ S LN AR+KVL+ ++ V + ++A K L V KD Y ++L LIV
Sbjct: 61 QVDVGRKIEYSTQLNAARIKVLRAQDGVVGEMKEDAGKSLLRVTKDATAYRKVLKGLIVQ 120
Query: 464 ----------QALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKKDV-VLKVDTE 610
Q+L +L EP+V +R R+ D+ VES+L A+ +Y K K ++ + +D +
Sbjct: 121 RKDSEIIDQIQSLLRLREPSVVLRCREADRGHVESVLEAAKKEYAEKAKVNLPKILIDGK 180
Query: 611 NFLSPDT---------C-GGIELVAARGRIKISNTLESRLELIAQQLLPEIRNALFGR 754
+L P C GG+ + + G+I NTL++R+E+ +Q LPEIR LF +
Sbjct: 181 VYLPPPKTARDAHGPFCSGGVVIASQDGKIVCDNTLDARVEISFKQKLPEIRKKLFSQ 238
>01_01_0858 -
6699126-6699128,6699219-6699318,6700052-6700278,
6701032-6701188,6701422-6701522,6702147-6702251
Length = 230
Score = 100 bits (239), Expect = 1e-21
Identities = 69/229 (30%), Positives = 114/229 (49%), Gaps = 21/229 (9%)
Frame = +2
Query: 107 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 286
++D DV +Q+K M FI Q F IEK +LV+ ++ +I
Sbjct: 2 MNDGDVARQLKQMTDFIRQEAVEKAAEIEAAAAEEFQIEKLQLVEAEKKRIRLEFERNEK 61
Query: 287 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 466
I+ S LN +RL+VL+ ++D ++L+ A K L + +D +Y LL IVQ
Sbjct: 62 QGDIKKKIEYSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQ 121
Query: 467 ----------ALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNK---------IKKDV 589
+L +L EP V +R R+ D+ LVES+L A+ +Y +K + ++V
Sbjct: 122 DKLTKKNPEQSLLRLKEPAVILRCRKEDRELVESVLESAKNEYADKANIYPPEIMVDRNV 181
Query: 590 VLKVDTENFLS--PDTCGGIELVAARGRIKISNTLESRLELIAQQLLPE 730
L ++ + P GG+ L + G+I NTL++RLE++ ++ LPE
Sbjct: 182 YLPPAPSHYEAHGPSCSGGVVLASRDGKIVCENTLDARLEVVFRKKLPE 230
>09_02_0115 + 4413714-4414475
Length = 253
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 436 LRAAGHTYCAGSLPAHGTHCHYPRPSNRQGSGG 534
LR H+ + SLP H H+PRP +GS G
Sbjct: 20 LRLFSHSSASASLPLLLGHFHHPRPVPPRGSPG 52
>10_08_0762 -
20410681-20411834,20411999-20412098,20412200-20412298,
20412563-20414133,20415080-20415128
Length = 990
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 335 ARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQA 469
+RL++LK R+D++ N LD+A K+ E D + E V +QA
Sbjct: 826 SRLRILKCRDDNI-NSLDDAIKQHVEACTDQPNWDEDGVVAKIQA 869
>03_06_0576 +
34832900-34832911,34833006-34833122,34833752-34833810,
34833901-34833960,34834197-34834250,34834332-34834380,
34834493-34834540,34834889-34834954,34835591-34835641,
34835732-34835851,34835921-34836005,34836428-34836509,
34836666-34836774,34837005-34837051,34837131-34837188,
34839114-34839220,34839700-34839765,34839833-34839879,
34839977-34840042,34840146-34840243,34840344-34840469,
34840551-34840835,34840920-34840985,34841079-34841228
Length = 675
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = -1
Query: 739 VTYFRQQLLGDQLQARLQSVADLDTSPGCNQLDSTTGVGRQKVLGVDFQHNILLDLI 569
VT F + ++L + DL GC+ ++ G+G Q+ L + QH + +++
Sbjct: 205 VTEFEVSKVLEELGLTMDQFIDLCILSGCDYCENIRGIGGQRALKLIRQHGYIEEVV 261
>12_02_0312 + 17395716-17398112
Length = 798
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 308 IQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLV 451
++ +N+ N L VLK+ D + + L L+ PKD +++ ELL+
Sbjct: 383 VKETNIPNTDILSVLKLSYDALPSDLRACFASLSTFPKDYEIFRELLI 430
>11_05_0100 -
19056465-19056470,19057043-19057276,19058391-19058546,
19059639-19059763,19059912-19059983,19060080-19060184,
19060691-19060745,19061576-19061656,19062806-19062869,
19064715-19064782,19064947-19065033,19066121-19066285,
19066310-19066429,19066485-19066607,19066738-19067019,
19067936-19068075,19068234-19068335,19068802-19068874,
19069061-19069171
Length = 722
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -2
Query: 759 GLRPKRALRISGSSCWAISSKRDSRVLLILIRPLAATSSI--PPQVSGDKK 613
G+ + I S C A+ SK D +LIL P+A + ++ P ++ G +K
Sbjct: 332 GMNDNSKILIDNSCCLALYSKLDEDQVLILQSPVALSKAVKNPVELDGLRK 382
>05_06_0238 -
26621843-26622457,26622625-26623375,26624372-26624418,
26624632-26624740,26624969-26625050,26625164-26625248,
26625320-26625439,26625735-26625800,26625994-26626041,
26626148-26626196,26626576-26626613
Length = 669
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -1
Query: 709 DQLQARLQSVADLDTSPGCNQLDSTTGVGRQKVLGVDFQHNILLDLI 569
++L+ + DL GC+ DS G+G Q L + QH + ++
Sbjct: 110 EELELTMDQFIDLCILSGCDYCDSIKGIGGQTALKLIRQHGSIESIL 156
>02_05_0534 +
29819323-29819900,29820122-29820202,29821007-29821027,
29821310-29821366,29822028-29822147,29822278-29822494
Length = 357
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 490 HCHYPRPSNRQGSGGVPARKSPNRLQE*DQEGCCVE 597
H H+ PS G GG PA SP ++ + EG VE
Sbjct: 33 HRHFSAPSQPDGGGG-PAPVSPESMKHQEIEGPTVE 67
>01_01_0784 + 6068230-6068580,6068676-6069127,6070208-6070736
Length = 443
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 457 YCAGSLPAHGTHCHYPRPSNRQGSGGVPARKSPN 558
YC P H T+ + N+ GSGGV A S N
Sbjct: 279 YCTTQPPHHMTYFKFFFQKNQWGSGGVQAPASEN 312
>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
Length = 212
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 454 TYCAGSLPAHGTHCHYPRPSNRQGSGGVPARKSP 555
T + P H CH RP R G VP SP
Sbjct: 131 TSLLAATPGHRRDCHRARPPPRPGGRLVPVAASP 164
>03_02_0011 -
4909292-4909434,4909520-4909626,4910100-4910171,
4910713-4910803,4911136-4911272,4911377-4911417,
4911681-4911746,4912756-4913082
Length = 327
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 532 HQSLVGLTDADSDSGFHELEESLHN 458
HQS +DADSD G LEE+L++
Sbjct: 286 HQSTEEGSDADSDDGLPPLEENLNH 310
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,241,643
Number of Sequences: 37544
Number of extensions: 437730
Number of successful extensions: 1303
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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