Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4007
(560 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 129 2e-31
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 129 2e-31
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 29 0.35
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 29 0.62
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 27 2.5
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 4.4
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 25 5.8
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo... 25 5.8
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 25 5.8
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 25 7.6
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 7.6
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 129 bits (312), Expect = 2e-31
Identities = 58/85 (68%), Positives = 69/85 (81%)
Frame = +1
Query: 1 PQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKN 180
P+RIH VR RGGN K+RALRLD+GNFSWGSE ++KTRII V Y+ SNNELVRT TL K+
Sbjct: 40 PKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKS 99
Query: 181 AIVVVDATPFRQWYESHYTLPLGRK 255
AIV +DA PFR WYE+HY + +G K
Sbjct: 100 AIVQIDAAPFRVWYETHYGILMGSK 124
Score = 81.8 bits (193), Expect = 6e-17
Identities = 44/87 (50%), Positives = 55/87 (63%)
Frame = +2
Query: 242 LLGGKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRP 421
+L G KG K T +S+ RK+ AR +KV+ ALE QF GRL A V+SRP
Sbjct: 119 ILMGSKGKKATSTPNP-----KSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRP 173
Query: 422 GQCGRADGYILEGKELEFYLRKIKSKR 502
GQ GR DGYILEG+EL FYLR++ K+
Sbjct: 174 GQSGRCDGYILEGEELHFYLRRMAPKK 200
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 129 bits (312), Expect = 2e-31
Identities = 58/85 (68%), Positives = 69/85 (81%)
Frame = +1
Query: 1 PQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKN 180
P+RIH VR RGGN K+RALRLD+GNFSWGSE ++KTRII V Y+ SNNELVRT TL K+
Sbjct: 40 PKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKS 99
Query: 181 AIVVVDATPFRQWYESHYTLPLGRK 255
AIV +DA PFR WYE+HY + +G K
Sbjct: 100 AIVQIDAAPFRVWYETHYGILMGSK 124
Score = 81.0 bits (191), Expect = 1e-16
Identities = 44/87 (50%), Positives = 55/87 (63%)
Frame = +2
Query: 242 LLGGKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRP 421
+L G KG K T +S+ RK+ AR +KV+ ALE QF GRL A V+SRP
Sbjct: 119 ILMGSKGKKATATPTP-----KSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRP 173
Query: 422 GQCGRADGYILEGKELEFYLRKIKSKR 502
GQ GR DGYILEG+EL FYLR++ K+
Sbjct: 174 GQSGRCDGYILEGEELHFYLRRMAPKK 200
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 29.5 bits (63), Expect = 0.35
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 479 DRTRVLCLLRCNHRRDHTDLGDSPRKPANAPCGIALLE 366
D + CLLR H+RD + + RK N G LLE
Sbjct: 434 DANIIPCLLRSKHKRDKANPENKERKLVNNLLGAQLLE 471
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 28.7 bits (61), Expect = 0.62
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +2
Query: 251 GKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASR 418
GKKG+K+ A++ ++R + AR+ A + K ++E+ +LA + +
Sbjct: 771 GKKGSKVITAKKVSAKERREARRARRQTALEESLKAPISIEDATDPQTILAILKQK 826
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 26.6 bits (56), Expect = 2.5
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 82 WGSEC--STRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRK 255
WGS+ +K + +V+ +++ + +T L AT F + +S+Y +PL R+
Sbjct: 250 WGSQSYLQEKKAGLAEVLNISTSQQKPKTTALDYEVFRHEMATKFSSFADSYYPVPLDRE 309
Query: 256 E 258
+
Sbjct: 310 Q 310
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 221 YHCLNGVASTTTIAFLTRVFVRTNS 147
++C N V S T + + VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.4 bits (53), Expect = 5.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 143 LDALYTTSMIRVLRVEHSDPQEKLPVSRR 57
L+ + T S +V R H DP KLP RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221
>SPAC18G6.06 |||U3 snoRNP-associated protein
Utp11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 25.4 bits (53), Expect = 5.8
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 293 INKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGK 463
++ K +K A + L RQ+ K A EE+ RLL G+ GR ++ GK
Sbjct: 188 LHSKLKEKAATELLLRQKRDKKLAAAEERVELDRLL------QGKGGRQKKKVVNGK 238
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.4 bits (53), Expect = 5.8
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +1
Query: 25 SRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDAT 204
+R T R+L +G S S ++ +TR V +AS+N L+ + ++ V T
Sbjct: 541 TRRSRTPIRSL---SGRSSVASSRNSSRTRSYSNVSSASSNSLISIISSKPSSSTVQRQT 597
Query: 205 PFRQWYE 225
PF +E
Sbjct: 598 PFHSPFE 604
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 7.6
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 248 PRGNV*CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDAL 132
P ++ + +CL V + I+F T FVR N ++DAL
Sbjct: 544 PLASICSEDLNCLISVKNRL-ISFETHGFVRLNVVMDAL 581
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.0 bits (52), Expect = 7.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 40 TKYRALRLDTGNFSWGSECSTRKTRI 117
T YRA+ LDTG+ E + K RI
Sbjct: 1133 TVYRAVNLDTGDLMAVKEVALHKPRI 1158
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,077,535
Number of Sequences: 5004
Number of extensions: 38395
Number of successful extensions: 113
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -